Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq2348 614 8e-171 >seq2348 Length=90098 Score = 614 bits (680), Expect = 8e-171 Identities = 716/965 (74%), Gaps = 6/965 (1%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | |||||||| ||||| | ||||| ||| | | || Sbjct 63545 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACA 63604 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 ||||| | || |||||| | || |||||||| |||||||| || |||||||| || ||| Sbjct 63605 GCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATC 63664 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || ||||| ||||| || | | || || |||||||| ||| | ||||| ||| | Sbjct 63665 CGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATT 63724 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || ||||| ||||| || || | ||||||||||| | |||||||| || | || ||| Sbjct 63725 CCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGAC 63784 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||||| ||||| ||||| |||| |||||| || | || |||||| | | ||| | Sbjct 63785 GAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTA 63844 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| ||| | | ||||||||| ||| | ||||| ||| | |||||||| Sbjct 63845 GCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATT 63904 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | || |||| ||| || || ||| |||| || |||||||||| | | || ||| || Sbjct 63905 TTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATC 63964 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 || || ||| |||||||||| |||||| | || |||||||| || ||||||| |||| Sbjct 63965 GGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATG 64024 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 || || ||||| || || ||||||||||| |||||||||||||| ||| ||||| ||| Sbjct 64025 TTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCT 64084 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| || ||||| || || ||| ||||||||| ||||| ||||| |||||| | || Sbjct 64085 GGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTA 64144 Query 215915 ATCAGAGAGACAACTGAGCA---AGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 ||| | || |||||| | | |||| |||||||||||||| || |||||||| Sbjct 64145 ATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAA 64201 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 64202 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATAC 64261 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 ||| ||||||||||||| | | | ||||||||| | || || | || ||| | || Sbjct 64262 GCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGT 64321 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 |||||| |||||| | || | || ||||| |||||| | ||||| ||||||||| Sbjct 64322 ATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTC 64381 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || ||| || || |||||||| ||| || | ||| Sbjct 64382 AACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAAC 64441 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || | | |||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 64442 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Query 216272 TTGGC 216276 || || Sbjct 64502 TTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745017709252800