Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2348 719 0.0 >seq2348 Length=90098 Score = 719 bits (796), Expect = 0.0 Identities = 737/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||| | || |||||||||| ||||| | |||||||| || | || | || || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| |||||| | |||||| | ||||||||||| || |||||||| |||||||| ||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || ||||| |||||| |||||||||||||| | ||||||||||| || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC- 182119 || || ||||||||||||| |||||| || || || |||||| | | || | || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 63847 Query 182120 --CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 ||||||||||||||| ||||||||| ||||| ||||| |||||||| ||||| | Sbjct 63848 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 63907 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 ||||| | ||| |||||||| ||||||||| ||| ||||||||| | || || |||| Sbjct 63908 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 63967 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 |||||| ||||| |||| ||||| | || ||||| || || ||||||| ||||| Sbjct 63968 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 64027 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || |||||||| || ||||||||||||||||| || ||||| ||| ||||| || ||| Sbjct 64028 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 64087 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 || || ||||| || | || ||||||||||| |||||| | || |||||| | || Sbjct 64088 GTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATC 64147 Query 182418 CGTGAGACGACTGAGCAAGA-GTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAA 182474 ||||| || ||| | | || | | ||||| |||||||| || || ||||||||| Sbjct 64148 CGTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAA 64204 Query 182475 GAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCA 182534 || || || |||||||| || || || || ||||| || ||||| ||||||||||||||| Sbjct 64205 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCA 64264 Query 182535 TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATC 182594 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || ||| Sbjct 64265 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 64324 Query 182595 TGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAAC 182654 ||||| || || ||||| | ||| |||||||||||| | ||||| |||||||||||| Sbjct 64325 TGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAAC 64384 Query 182655 CAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGT 182714 || || | ||||| | || |||||||| | ||||||||||| || | | |||||| Sbjct 64385 CAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 64444 Query 182715 GCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGAT 182771 |||| | | ||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct 64445 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 520 bits (576), Expect = 1e-142 Identities = 732/1012 (72%), Gaps = 12/1012 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | ||||| ||||| || || ||| | || ||||| || || || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 183371 || || |||||| | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 4909 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | |||||||||||| | | ||| | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||| ||| | || ||| | |||| |||||| ||| | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCG-CTTGATTGGT 183549 || |||| | ||||| ||| || || ||||| |||||| ||||||| |||| | ||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTG-TAGGT 4731 Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609 || ||||| || ||||| ||||| || || || ||||| || || || || ||||||| Sbjct 4730 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 4671 Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669 | |||||||| | || || | ||||||||||| |||||||| || || ||||| Sbjct 4670 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 4611 Query 183670 ATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 || || |||||||||| ||| | || |||||||| |||||||| | || || ||||| Sbjct 4610 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 4551 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 |||||||| || || || || |||| || |||||| | ||| || ||||| | || Sbjct 4550 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 4491 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| || ||||| | |||||||| || || || |||||| || ||| | || Sbjct 4490 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACC 4432 Query 183850 A-CTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 | | ||| |||||| || ||||| ||||| |||||||| | |||||||||||||| || Sbjct 4431 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTT 4372 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 || ||||| ||| || || |||||| | || ||||| ||||| |||||||| || | Sbjct 4371 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 4312 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTC-GTGCTTATG 184027 ||| | ||| |||| |||| || | || | || |||| ||| | || |||| Sbjct 4311 AGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCA-TTAAACTTAAGAGCATATG 4253 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | |||||| ||||||| | | ||||| ||||||||||||||||| || ||||| || | Sbjct 4252 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 4193 Query 184088 AGAACATACTTCTTAAT-GAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACAT 184146 | || || ||| |||| ||||| | | ||||| | || | || ||||||||| Sbjct 4192 AAAATAT-CTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACAT 4134 Query 184147 GAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 || |||||| |||| ||||||||||| ||||| | || || || |||| || Sbjct 4133 GAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 4082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611643547068000