Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2348 717 0.0 >seq2348 Length=90098 Score = 717 bits (794), Expect = 0.0 Identities = 754/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 164755 TGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTC 164814 |||||| || ||| ||| | ||| ||| | |||||| | || ||||||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 164815 GGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATC 164874 |||||| | |||||||| || | | ||||||| || || || | || |||||| Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 164875 GCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTAC 164934 || || || || || || || |||||||| |||||||| || || || || || | ||| Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 164935 GGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTC 164994 || |||||||| ||| | ||||| || |||| ||||||||| || || |||||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 164995 TATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAG 165054 || || ||||||||||||| | | || |||||| | |||||||||||||||||||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 165055 TTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTG 165114 | || || || |||||| | | |||||||||||||||||||| ||||| |||||||| Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 63874 Query 165115 TCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCT 165174 ||||| | || |||||||||||||||| |||||| | || || || ||||| Sbjct 63875 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 63934 Query 165175 GCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCT 165234 || ||||| ||| | | || || |||| ||||| || |||||||||||||||||| Sbjct 63935 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 63994 Query 165235 CTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTT 165294 | ||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||| Sbjct 63995 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 64054 Query 165295 ATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 165354 ||||| || ||||| ||| || |||||||| || || ||||||||| | ||| ||| Sbjct 64055 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 64114 Query 165355 ATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAA-ACAGAGAGTCA 165413 |||||||| |||||| || || | |||| || ||||||| || | | || Sbjct 64115 ATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCT 64171 Query 165414 G--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCAC 165471 | ||||||||||| || ||||||||||||||||| || || |||||||| ||||| ||| Sbjct 64172 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 64231 Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| || ||| | || |||||||||||| |||||||| || ||| | | ||| Sbjct 64232 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 64291 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 165591 |||||| | || || ||||| || || ||||||||||| ||||||||||| ||||||| Sbjct 64292 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 64351 Query 165592 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAA 165651 |||||||||||| | ||||| |||||||||||||| || |||||||||| || Sbjct 64352 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 64411 Query 165652 ATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCAT 165711 | ||| |||||||||||| || | |||||||||| | | ||||||||||| ||||| Sbjct 64412 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 64471 Query 165712 GAGCGTAACGCTCACAACTTCCCCCTCGA 165740 || |||||||| ||||||||||| || || Sbjct 64472 GAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 558 bits (618), Expect = 4e-154 Identities = 731/1007 (73%), Gaps = 4/1007 (0%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||| | ||||||||||||||||| ||| |||||||||| || ||| | | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGT 166351 || || |||||| | || ||| | ||||| ||||| ||| | |||| || || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCTGT 4909 Query 166352 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCA 166411 || || || ||| || |||||||||||| | | | | ||||| || ||||| || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 166412 AGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGG 166471 ||| ||||| | ||| ||| | || || | ||| | ||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGAAATCGCTCGTCTAGTAGGTA 166530 || |||| ||||||| ||| || || || || |||||||| |||||||| ||||||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 166531 TTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 166590 |||||||||| |||||||| || ||||| || ||||| || || |||||| ||| || Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 166591 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 166650 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || |||| | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 166651 TCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATA 166710 | ||||||||||| | ||| | ||||| ||||| ||||||||||| || ||||| || | Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 166711 TGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAG 166770 |||||||||||||||| ||| | ||||||||| | | ||||| || ||||| | ||| | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 166771 TAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTA 166830 |||| ||||| | | |||||||||| || ||||| ||| || ||| | | Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 4430 Query 166831 CTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCG 166890 | ||| |||||||| ||||||||||| ||||| ||| | | ||||| || || || | Sbjct 4429 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTG 4370 Query 166891 GTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 166950 || |||| ||| ||| || | ||| | |||||||| ||| | |||||||| || | | Sbjct 4369 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 4310 Query 166951 GTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 167010 || | ||||||||||| | ||||| | ||| | || | ||| | | || ||||||| Sbjct 4309 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACT 4250 Query 167011 TTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGA 167070 |||| || ||||| || | ||||| || ||||| || |||||||| |||||||| || | Sbjct 4249 TTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAA 4190 Query 167071 ACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGA 167130 | || | || || || ||||| | || |||||||| | || ||||| ||||| | Sbjct 4189 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAA 4130 Query 167131 GTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||| |||||||| || |||||| | || | || ||||| || ||| Sbjct 4129 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563612466086400