Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2348 655 0.0 >seq2348 Length=90098 Score = 655 bits (726), Expect = 0.0 Identities = 734/978 (75%), Gaps = 6/978 (1%) Strand=Plus/Plus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | || |||||| | ||||| | || | |||||||||||||| || |||||||| Sbjct 63532 TTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCC 63591 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 ||||| |||| ||| |||||| ||| | |||||||||||||| || || || || Sbjct 63592 TACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGA 63651 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 |||||||| ||| | ||||| || || || ||| | | || || |||||||| ||| | Sbjct 63652 TATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCAC 63711 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 ||||| ||| ||||| ||| ||||| || ||| | |||||||| || |||||||||| Sbjct 63712 AGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGC 63771 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 || || |||| || ||| | || |||||||||||||| ||| | || | || ||||| Sbjct 63772 TGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT 63831 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | || ||||||||| | | |||||||| ||||||||||| || Sbjct 63832 CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 63891 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||| | ||||| | || |||||||| | |||||| || |||||||| Sbjct 63892 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTT 63951 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 | | || || |||| || || ||||| || || |||||| |||||||||| ||||| Sbjct 63952 AATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 64011 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 64012 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 64071 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 ||| || ||||||||| |||| || ||| | | ||| |||||||| ||||| ||||| Sbjct 64072 GGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGT 64131 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAAC-GAGTCACAG--AACTATGGATACAA 170354 ||||||| | ||||| | || ||| || || | || | | ||||| || ||||| Sbjct 64132 AACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAA 64188 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 ||| ||||||||||||||||| |||||||| || || ||||| || |||||||| | | Sbjct 64189 ATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTT 64248 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 ||||||||||| || || || ||||| ||| | | ||||||||| | ||| | | Sbjct 64249 AATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTG 64308 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 || || ||| | |||||||||||| | | || ||| ||||||||||||| ||| | || Sbjct 64309 GCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAA 64368 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGC 170594 ||||| ||||||||||| ||| | || ||| | ||| || | || ||||| Sbjct 64369 CGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGC 64428 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 ||| || | ||| | || | ||||||||||||||||||| || ||||| || ||||| Sbjct 64429 TGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 64488 Query 170655 CTTCCCACTTGACTTGGC 170672 |||||| || || || || Sbjct 64489 CTTCCCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582798020784000