Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2348 655 0.0 >seq2348 Length=90098 Score = 655 bits (726), Expect = 0.0 Identities = 760/1022 (74%), Gaps = 2/1022 (0%) Strand=Plus/Minus Query 83944 TTAGTGCTACAGGAGTAACAGAAACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTAC 84003 ||| ||| || ||| |||| | | ||| | ||| | |||||||| || ||||||| Sbjct 64535 TTAATGCAACTGGAAGAACATTAGATACCGCTAAATCTAGAGGGAAGTTGTGCGCGTTAC 64476 Query 84004 GTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGA 84063 |||||||||| ||||||||||| | | ||||| || | | || ||||| || |||| Sbjct 64475 GTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATAATGTCAGCCCAAGTGTTGA 64416 Query 84064 CAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATG 84123 ||||| ||||||||| |||| || |||||||| ||||| || | || |||| Sbjct 64415 TCACACGACCTTGGCTATCAACAACTGATTGGTTGAAGTTGAATCCGTTTAAGTTGAATG 64356 Query 84124 CCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGA 84183 |||| ||||||| || ||||||| ||||| || || || |||||||||||||| |||| Sbjct 64355 CCATTGTGCTAATTCCAAGAGCAGTTAACCAGATACCTACAACTGGCCAAGCAGCTAAGA 64296 Query 84184 AAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGT 84243 | ||||| | || ||| |||||||| || || |||||||| | ||| || |||| Sbjct 64295 AGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCGTATTGGAAGATTAAACGTCCAAAGT 64236 Query 84244 AGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGT 84303 | ||||| ||||| || || || |||||||| |||||||| || || |||||||| |||| Sbjct 64235 AACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGT 64176 Query 84304 TTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCA 84363 | || ||| ||| |||||| ||||||| | ||| || ||||| |||||||||| Sbjct 64175 TAGCAGATACACCGTCTTCAGTTTCACGGATTAAACTAGATGTTACAAGAGAACCATGCA 64116 Query 84364 TTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCA 84423 ||||| ||||| || |||||| || ||||||||||| || ||| || || || |||| Sbjct 64115 TTGCACTGAATAAAGATCCACCAAACACACCAGCAACACCAGCCATATGGAATGGGTGCA 64056 Query 84424 TAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAA 84483 |||| ||||| ||||| || ||||| || | |||| ||||||| || || |||||||| | Sbjct 64055 TAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAGTTGAAAGTACCAGAGATACCTA 63996 Query 84484 GTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATG 84543 ||||| ||||||||||| |||||| |||| || || | | |||||| ||| || Sbjct 63995 AAGGCATACCATCAGAGAAGCTACCTTGTCCGATTGGGTAAATTAAGAATACTGCACTTG 63936 Query 84544 CCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATG 84603 | || || |||||||| ||| |||| || | ||||| |||||||| || | ||| || Sbjct 63935 CTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAAGGACGCATCCCTAAACGGTAGC 63876 Query 84604 AAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||||||||| |||||||| |||| | |||| | | |||||| || || ||| Sbjct 63875 TAAGTTCCCATTCACGTCCCATGTA-GCAAGCTACACCTAATAAGAAGTGTAATACTACA 63817 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 ||||| ||||| ||||| || || ||||||||||| | | || |||||||||| || Sbjct 63816 AGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGG 63757 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 ||||| || | ||||||||| ||||| ||||| || ||||| | || ||||||||| Sbjct 63756 TAGAAGTGAATACCAATAGCGTTAGAACTTGGAATAACCGCACCTGTGATAATGTTGTTT 63697 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 ||||| | || || ||||| ||||| ||||||||||| || ||||| ||||| ||||| Sbjct 63696 CCGTATAAAAGTGATCCAGCCACTGGTTCACGGATACCATCGATATCTACTGGAGGTGCT 63637 Query 84843 CCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902 | | ||| || |||||||| ||| || || | | || || || ||||| | | Sbjct 63636 GCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACA 63577 Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAGTTCTGC 84962 || |||||||| | || | |||||| | ||| |||| |||| |||||| || | Sbjct 63576 CCGAACCAACCGATGTATAAACGGTTTTCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCC 63517 Query 84963 CA 84964 || Sbjct 63516 CA 63515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571224613288800