Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2348 484 2e-132 >seq2348 Length=90098 Score = 484 bits (536), Expect = 2e-132 Identities = 715/999 (72%), Gaps = 14/999 (1%) Strand=Plus/Plus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || ||| | || || || || |||||| | || | || |||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 25853 GGGGTGCTTATGATACCCTGC-TTACTCGCAGCCACTACATGTTTTATACTTGCCTTCAT 25911 || || | ||||| |||| | ||| | |||| || | || || || | || ||||| Sbjct 63575 GGTGTTTTAATGAT-CCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCAT 63633 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 ||||||||| || |||||||| ||||| || ||||| ||||| | || || | | || Sbjct 63634 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATA 63693 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 ||||||||| || || |||| || || | || |||||||| || || | || || Sbjct 63694 CGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTT 63753 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||||| | |||||||||| | | ||||| ||||| ||||| || || || || || Sbjct 63754 CTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCA 63813 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA-GGGA-GACAGTGGGAA 26149 ||| | | || ||||||||| |||| ||||| || || |||| | | |||||| Sbjct 63814 ACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTA--CATGGGACGTGAATGGGAA 63871 Query 26150 CTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCC 26209 || ||| | |||| ||| | || ||||| || || || | |||| ||| || | Sbjct 63872 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 63931 Query 26210 GCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATG 26269 ||||| ||||| |||||| |||| || |||||||||| || || |||||| ||| Sbjct 63932 GCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 63991 Query 26270 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATA 26329 ||| | ||||||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 63992 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 64051 Query 26330 CTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCT 26389 || |||||||||||||||||||||||||||||||| || || |||||| || | ||| | Sbjct 64052 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 64111 Query 26390 GCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTC 26448 || ||||| || | | || || | || ||| | | ||||| ||| | || || Sbjct 64112 GCAATGCATGGTTCTCTTGTAACAT-CTAGTTTAATCCGTGAAACTGAAGACGGTGTATC 64170 Query 26449 ACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 || || || || || ||||| ||||| ||||| || || || || || |||||||| Sbjct 64171 TGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 64230 Query 26509 CGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCA 26568 ||| |||||||| | ||||| || || || || ||||| || ||| ||| || | || Sbjct 64231 CGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACA 64290 Query 26569 TTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCAC 26628 ||||| | ||| ||||||| ||||| || || ||| | || || | || || |||| Sbjct 64291 CTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCAC 64350 Query 26629 AATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAA--TGG 26685 ||||||||| ||| |||| || || ||||| ||||| ||||| || ||| | || | | Sbjct 64351 AATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCG 64410 Query 26686 AAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTAT 26745 ||| | || || |||||||| | | ||||| ||| | | || | ||||| || Sbjct 64411 TGTGATCA-AC--ACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 64467 Query 26746 GCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||| ||||| || || ||||| || || || ||||| Sbjct 64468 GCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146714447300640