Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2348 542 9e-150 >seq2348 Length=90098 Score = 542 bits (600), Expect = 9e-150 Identities = 714/981 (73%), Gaps = 14/981 (1%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||||||||||||| || || | || | | |||||| ||||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 64387 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || ||||| ||| | ||| | ||| || | | Sbjct 64386 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 64327 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||||||||| | |||||| |||||| || || || || Sbjct 64326 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 64267 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 64266 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 64207 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 36330 ||||||||||| || ||||| || || ||||| |||| || || || ||||||| Sbjct 64206 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACA--CCGTCTTCAGTTTCAC 64149 Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390 | || | || || |||||| || ||||| ||| |||||||| |||||| || | Sbjct 64148 GGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACA 64089 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 64088 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 64029 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 | ||||| || |||||||| || || ||||| | |||||||||||||||||| || |||| Sbjct 64028 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 63969 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 |||| | ||||| | ||||||||| ||| |||||| || || || ||||| |||||| Sbjct 63968 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 63909 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA-- 36628 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| ||| Sbjct 63908 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 63849 Query 36629 -AGCTGAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 |||| | ||| ||| |||| ||| || || | ||||| || || || ||||| || Sbjct 63848 AAGCT---ACACCTAATAAGAA-GTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 63793 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTC 36746 | ||| ||||| | | ||||||||||| | |||||||||||||| ||| || ||||| Sbjct 63792 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 63733 Query 36747 GATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 36806 || ||| | | || || | ||| ||||||||||| || | | || ||| | || Sbjct 63732 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 63673 Query 36807 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 36866 || ||||| |||||||| ||||| || ||||| || || | || || || | || || Sbjct 63672 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCA 63614 Query 36867 G-TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | | |||||||| | || ||||||||||| || || ||||| || | || | || Sbjct 63613 GCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 63554 Query 36926 GTTGTTTGTACTTGTAACCCA 36946 ||| | ||| || || | ||| Sbjct 63553 GTTTTCTGTGCTAGTGATCCA 63533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150442143608440