Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2348 596 4e-166 >seq2348 Length=90098 Score = 596 bits (660), Expect = 4e-166 Identities = 726/981 (74%), Gaps = 14/981 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| || ||||||||||| || || ||||||||||||||||||||||| | | Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 |||||||| | | || ||||||||| | | | ||| |||| ||||| ||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTA---TCAACAACT 64390 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || |||||||| || ||||| | || || ||||| ||| ||||| | || || Sbjct 64389 GATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTT 64330 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| | |||||| |||||| ||| ||||| Sbjct 64329 AACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTG 64270 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || || || |||||||| | | |||||||| || || || || || ||||| || Sbjct 64269 AAACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 64210 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT--GTTT 5549 |||||||| ||||| || ||||| || || ||||| ||| || || || |||| Sbjct 64209 GTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGA--TACACCGTCTTCAGTTT 64152 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 |||| || | ||| || |||||| |||||||| ||| ||| |||| |||||| | Sbjct 64151 CACGGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAA 64092 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 | || ||||||||||| ||| ||||| || |||||||| || ||||||||||| |||| Sbjct 64091 ACACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGA 64032 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| ||||| ||||| ||||||||||||||||| | ||||||||||||| ||| || | Sbjct 64031 ATACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTAC 63972 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 | ||||||| ||||| | ||| ||||||| ||||| || || || ||||| | | Sbjct 63971 CTTGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAG 63912 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 ||||| ||||||| || ||||| ||||| | ||| ||||||||||||| ||||||| || Sbjct 63911 CTACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT 63852 Query 5850 AAGCTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 | || | ||| |||||| ||||| || || || |||||||| || || || |||||| Sbjct 63851 AGCAAGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 63793 Query 5909 AGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 |||||||| || | | || |||||||| | || |||||||| | ||||| ||||| Sbjct 63792 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 63733 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || || || | ||| || |||| || ||||||||||| || | || ||||| || || Sbjct 63732 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 63673 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 |||||||| || || ||||| || ||||| ||||| || | ||| || | || || ||| Sbjct 63672 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCA 63614 Query 6089 G-TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 | | || || ||||| | || || |||||||| ||||| ||||| || | || | || Sbjct 63613 GCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 63554 Query 6148 GTTGTTGGTGCTAGTAACCCA 6168 ||| | |||||||| | ||| Sbjct 63553 GTTTTCTGTGCTAGTGATCCA 63533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152637164781960