Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2348 562 9e-156 >seq2348 Length=90098 Score = 562 bits (622), Expect = 9e-156 Identities = 716/980 (73%), Gaps = 12/980 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | ||||||||||||||| || || | || | | |||||| ||||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 64387 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || ||||| | || || ||||| ||| | ||| | ||| || | | Sbjct 64386 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 64327 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| |||||| ||| || || || Sbjct 64326 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 64267 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 64266 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 64207 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 25810 ||||||||||| || ||||| || || ||||| |||| || || || ||||||| Sbjct 64206 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACA--CCGTCTTCAGTTTCAC 64149 Query 25811 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 25870 | || | || || |||||| || ||||| ||| |||||||| |||||| || | Sbjct 64148 GGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACA 64089 Query 25871 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 25930 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 64088 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 64029 Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990 | ||||| || |||||||| || || ||||| | |||||||||||||||||| || |||| Sbjct 64028 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 63969 Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050 |||| | ||||| | ||||||||| ||| |||||| || || || ||||| |||||| Sbjct 63968 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 63909 Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGT 26107 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| || Sbjct 63908 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 63849 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||||| | || | | ||||| || || | |||||| || || |||||||| || | Sbjct 63848 AAGCT---ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 63792 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 ||| ||||| | | ||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 63791 GCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 63732 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || | | || |||| ||| ||||||||||| || | | || ||| | || | Sbjct 63731 AACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 63672 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | ||||| |||||||| ||||| || ||||| || || | || || || | || || | Sbjct 63671 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCAG 63613 Query 26348 -TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 26406 | |||||||| | || ||||||||||| || || ||||| || | || | ||| Sbjct 63612 CTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGG 63553 Query 26407 TTGTTTGTACTTGTAACCCA 26426 || | ||| || || | ||| Sbjct 63552 TTTTCTGTGCTAGTGATCCA 63533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151981218221360