Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq5823 192 5e-44
>seq5823
Length=45548
Score = 192 bits (212), Expect = 5e-44
Identities = 328/476 (69%), Gaps = 0/476 (0%)
Strand=Plus/Plus
Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859
||||||| || || |||| |||||| || || || || || | ||||| | ||||||
Sbjct 5640 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 5699
Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919
|| | || | || ||| ||||| | || | || | ||| | ||| ||| ||
Sbjct 5700 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 5759
Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979
|| || || || || | ||||||||| | || | ||| || | |||||| |||||||||
Sbjct 5760 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 5819
Query 29980 CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 30039
||||| ||||| || || || | |||| ||||| || || ||||| |||||
Sbjct 5820 CCGTCTGCGACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 5879
Query 30040 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 30099
|| |||||||||||| | || |||||||| | || |||||||||| | ||||| |
Sbjct 5880 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 5939
Query 30100 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30159
| || || ||| || | || | || | |||||||| ||||||||
Sbjct 5940 GTTATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAA 5999
Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219
||||| || |||||||||| ||| ||||| ||||| || || |||| || |||||||||
Sbjct 6000 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 6059
Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30275
| ||| | |||| ||||||| | | || | ||| ||| ||||||||||
Sbjct 6060 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408583437014780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |