Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq259 113 3e-20 seq802 109 4e-19 >seq259 Length=12200 Score = 113 bits (124), Expect = 3e-20 Identities = 160/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||||||||| || |||||| ||||| ||||| ||||| | | || || Sbjct 5790 CGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCG 5731 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || ||||| || || ||||| ||||| | ||| | ||||||||| Sbjct 5730 TCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTG 5671 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || || ||| | | | || | |||||| || | ||| || Sbjct 5670 TCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATG 5611 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG-TGTA 48774 || || ||||||| || || ||||| || |||||| || |||| Sbjct 5610 GTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCATCCTGCTGTA 5567 >seq802 Length=4370 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| || | || |||||| ||||| ||||| ||||| || | || || Sbjct 272 CGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCG 331 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || || || || || ||||| ||||| | ||||| |||||||||| Sbjct 332 TCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 391 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||||||| || ||| | | | || | ||| || |||| || || Sbjct 392 TCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATG 451 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || ||||||| || || || || |||||||| || Sbjct 452 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGT 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380905751235780