Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2348 659 0.0 >seq2348 Length=90098 Score = 659 bits (730), Expect = 0.0 Identities = 711/940 (76%), Gaps = 6/940 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||||||||| || ||||||||| || | |||| ||| |||||||||| Sbjct 63564 TCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCA 63623 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| |||||||||||||| ||||||||||||||| | ||||| || || || | Sbjct 63624 TCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGAT 63683 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 ||||| | || || |||||||| ||| | ||||| || |||| ||||| || ||||||| Sbjct 63684 CACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTG 63743 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || |||||||||| || | |||||||| || || | || || ||| | || || |||| Sbjct 63744 GTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTG 63803 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||||||||||| || |||||| | | || | | ||| || ||| Sbjct 63804 GTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTG 63863 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | ||||||||| ||||| ||||| |||||||||||||| | || || | ||| || | Sbjct 63864 AATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTC 63923 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| |||||||| || || ||||| | || || |||| |||||| ||||||| Sbjct 63924 CAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTG 63983 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||| ||||||||||| |||| |||||| || ||||||||||| | Sbjct 63984 ATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAAC 64043 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 ||||||| || |||||||| ||||||||| ||| || || ||||| || ||||| || Sbjct 64044 ACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTT 64103 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||| ||||| ||||||||||| || ||| | | ||| | |||||| || Sbjct 64104 TATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACG 64163 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||||||||||| || || |||||||||||||| ||||||||||| || | Sbjct 64164 GTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAG 64223 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || |||||||| || || |||||||| || ||| |||||||||||||||| Sbjct 64224 CTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTG 64283 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||||| | || || || | |||||||| ||||| | || Sbjct 64284 CTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAA 64343 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | || |||||||||||| | ||||| ||||||||||||||||| || ||||| | Sbjct 64344 TTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCC 64403 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || ||||| |||||||| || || | ||| | || | | ||||||| Sbjct 64404 AAGGTCGT---GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGG 64460 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 |||| |||||||| ||||| || ||||||||||| || || Sbjct 64461 AAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553037372978400