Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2348 655 0.0 >seq2348 Length=90098 Score = 655 bits (726), Expect = 0.0 Identities = 723/956 (76%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 162979 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAG 163038 | ||| |||||| |||| ||| |||| || || || || || || || || |||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 163039 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 163098 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 163099 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 163158 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 163159 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 163216 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 163217 CATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTG 163276 | || ||||||||||||||||||||| || || ||||| ||||| || ||||| | | Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 163277 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 163336 |||| | ||| || || || || |||||| ||||| ||| | | || || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 163337 AAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTG 163396 ||||| |||||||| | ||||| | || |||||||| || ||||||| |||| | | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 163397 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTG 163456 | ||||||||||| |||||||| || |||||||| ||||||||| || || ||||||| Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 163457 TCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCC 163516 | || |||||||| | ||| ||||||||||| |||||| || ||| | ||| Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 163517 GTGAGACGACTGAA-ACTGAGTCACAA--AACTATGGTTACAAGTTTGGTCAAGAAGAAG 163573 |||| || |||| || | || | ||||| |||||||| ||||| |||||||||| Sbjct 64149 GTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 64205 Query 163574 AGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCAT 163633 | || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| ||| Sbjct 64206 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 64265 Query 163634 CATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCT 163693 ||||||||| | | | ||||||||| | || || ||||| || || || |||| Sbjct 64266 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 64325 Query 163694 GGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 163753 |||| ||||| || || | ||||| |||||||||||| | ||||| ||||||||||||| Sbjct 64326 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 64385 Query 163754 AGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCG 163813 | || | ||||| | || ||||||||| ||||||||||||| ||| | | ||||| | Sbjct 64386 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 64445 Query 163814 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 64446 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 500 bits (554), Expect = 1e-136 Identities = 719/1011 (71%), Gaps = 2/1011 (0%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | ||||||||||| || || ||| | || ||||| || | || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || || || | ||| || |||| || ||| | || || || ||||||| || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 ||||| ||||| | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 4909 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||| ||| | || ||| |||||| ||| || || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTAT 164977 || || | ||||||| ||| | || || ||||| | || ||||| | ||||| Sbjct 4788 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 ||||| || ||||| ||||| || || || ||||| || || || || || ||| | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 ||||| || | || || | |||||||| || ||||| ||||| || ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 || ||||||| || ||| | ||||| ||||| |||||||| || || || ||||| || Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 ||||||||| ||||| || || || || ||| | ||||||| |||||||||| || || Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 ||||| ||||||| ||| ||||| || || ||||| || || || | || Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 4429 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 ||| |||||| |||||||| ||||| || || ||| | |||||||| || || || || Sbjct 4428 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGG 4369 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 4368 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 4309 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||||| ||| |||| || | ||| | || | ||| | | || || || || Sbjct 4308 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 4249 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 || ||| ||| | | ||||| ||||||||||||||||| || ||||| || ||||| Sbjct 4248 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 4189 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 ||| |||| || ||||| | | | ||| |||| | || ||||| |||||||| Sbjct 4188 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 4129 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 165628 ||| | |||||||| || || || || | || |||||||||||||| || Sbjct 4128 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 4078 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 164048 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 164107 ||||| || ||| |||||||| |||| || ||||||||| ||| |||| | ||| Sbjct 24014 TGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGAACTACCTTAT 23955 Query 164108 TCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 164167 |||||| | ||||| |||| || | |||||||| | ||| ||| || ||||| Sbjct 23954 TCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGTACAATTGAT 23895 Query 164168 CAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGT 164227 || || ||||| || |||| || ||||| |||||| ||||||||| | || ||| Sbjct 23894 CAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTATTAACTTGT 23835 Query 164228 GTAGCATATCCAACATCTGATTGT 164251 || || ||||| ||||||||||| Sbjct 23834 GTTGCTTATCCCGCATCTGATTGT 23811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563161304776800