Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2149 289 5e-73 seq1319 190 4e-43 >seq2149 Length=43014 Score = 289 bits (320), Expect = 5e-73 Identities = 977/1494 (65%), Gaps = 67/1494 (4%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| | ||||| | ||||||||| ||||| ||||| ||||| Sbjct 34730 GTACATGTTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGA 34671 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC--GC-CGATGAG 213064 || || |||||||| || | || || ||| | || |||||||| || | ||| Sbjct 34670 TGCGGTAGGCATGGGTGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAA 34611 Query 213065 GCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACAT 213124 ||| || | | ||||||||||| | || || ||||| |||||| Sbjct 34610 GCGT--AAAC-CGGCCCAGTCCCAGCGAGTTGAGGGGG---------TCACGCCCCACAT 34563 Query 213125 GTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATG 213184 ||| || || |||| ||| ||||||| |||| ||| | | | |||||| || | Sbjct 34562 GTCGAATTGGAAGACGCCCTTGCTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTC 34503 Query 213185 CTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTC 213244 || | | || | ||| ||||||| | || || |||| ||||| || || || || Sbjct 34502 CTTCATCGCGATCTCCATCGACGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTC 34443 Query 213245 CCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTG--GAACAC 213301 | |||| |||| || |||||| || ||| ||| ||| ||| ||| ||| ||| | Sbjct 34442 CTTGTTAAGCTGCTGGGCCTCCGGAGACTCGAATGGGAATCG-CATC--TTGATGAAGGC 34386 Query 213302 ATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGA 213358 || |||| ||||| || ||||| |||||||| | ||||| || ||| || | ||| Sbjct 34385 GTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGC 34326 Query 213359 GCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCAC 213418 ||||| | ||||| ||||| |||||||| ||| ||||| || || |||| Sbjct 34325 T---TCCTCGACAGGGTAGTAGTTGATGTCGATGACGCGGTTCAGGTTTCGTGTCACCAC 34269 Query 213419 TTTGGTGA---CATGGGCCAGGTAC---TCGTGATTGAACA------------CGTAGCC 213460 || |||| ||| | | | | |||| | || | || |||| Sbjct 34268 CTTCGTGATTTCATACAGCCGCTGCAGGTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCC 34209 Query 213461 CCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT- 213519 | | | || | || | | ||| | | |||||||||||| || || ||||| | Sbjct 34208 CTCCCCTTGGATGAATGCGGAAAGGTTCACGGAGGCCAGGTTGCAGACCGCGACCTCATC 34149 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 | | | | |||||||| |||||||| |||||||| ||| || ||||||||||| || Sbjct 34148 GGGCGAC-GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGT 34090 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCT 213639 |||| |||||||| || |||| | |||||| | |||||||| || | || |||| Sbjct 34089 TCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCT 34030 Query 213640 CTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC-GCCTGACA 213698 | | |||||| |||| ||| | |||||| | | |||||| | ||| || || Sbjct 34029 CCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGGGCCTTAATAACCTTGCGTGCTT 33970 Query 213699 GCTCCGGGCGTAGCCTCGTA-CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCT 213757 | || | | |||||| ||| ||||||||| ||| || || | ||| || || Sbjct 33969 TC-CCACTCTT---CTCGTAGCTGG-CGTAGAGCTGGTTAAACTCCTCGCCGCACACGTC 33915 Query 213758 GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTG-ACTC 213816 |||| ||||| || ||| || | ||| |||||||||||| |||| || | Sbjct 33914 CGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCG-CTCTCCACGC 33856 Query 213817 TCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCC-TGGTC-CTCCT-CT 213873 | ||||||||||||| || ||| || ||| |||||| || | || | |||| || Sbjct 33855 GCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACT 33796 Query 213874 CGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCT 213933 ||| || ||| || ||||| || || || ||||||||||| || ||||| |||| Sbjct 33795 CGTTG---CCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCT 33739 Query 213934 CCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCC---GCCCTGGTCCACCAGCCTGGCCA 213990 | | ||||||||| |||| ||| | |||||| ||||||||| || | |||| Sbjct 33738 CTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCG 33679 Query 213991 CCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTA 214050 |||||| | ||| || | ||||| | |||||||| ||||| | ||| | Sbjct 33678 TATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAA 33619 Query 214051 TATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGG 214110 | || ||| | |||| | |||| ||||| | || || ||||| || | |||| Sbjct 33618 TGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGG 33559 Query 214111 AGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGT 214170 | || ||||| || | | || || ||||||| | ||| ||| || | | | Sbjct 33558 AAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGG 33499 Query 214171 TCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGC 214230 |||| | ||||||| ||||| ||||||| | | ||| | |||||||| || || Sbjct 33498 TCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCG 33439 Query 214231 TGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGT 214290 | ||||| | | || ||| || | ||| ||||||||||||| | | | |||| Sbjct 33438 TAGCATGCGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGT 33379 Query 214291 CGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349 | |||||||| | || ||| | ||| | |||||||||||| | ||| || | Sbjct 33378 TCTCTTTGTGGATACCAATTGC-CACACGCATGATCATGTGCTGGGGGCGCTCCATAACT 33320 Query 214350 CCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | | ||| || ||||| || ||||| || || || ||||||||| Sbjct 33319 ACCCCGTTCATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAG 33266 >seq1319 Length=24917 Score = 190 bits (210), Expect = 4e-43 Identities = 630/965 (65%), Gaps = 30/965 (3%) Strand=Plus/Plus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 ||||||||||| || |||||||| | | | ||||| | | ||||||||||||||| Sbjct 9017 GCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCACAGA 9076 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| | ||||||||||| |||||| ||||| ||| |||| || |||||| Sbjct 9077 TTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCCTTG 9136 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 || ||||||||||| | || ||||| | ||| || ||| || ||| ||| | || Sbjct 9137 TACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGAT--GGCAAACCACAAGT 9194 Query 213673 ACCTGGCCTTG-ACCACCCGCCTGACAGCTCCGGGCGTAGCCT-CGTACTGTTCGTAGAG 213730 |||| | | || | | |||| ||| | | | | |||| | | || || Sbjct 9195 -CCTGAGCACGCACTGTCTTCTTGACT----CGGCCCTCTCGTTCGTATTTTAAATATAG 9249 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGACAG-GATGCGGGACACA 213786 || ||| | ||||| | | |||| || || || || ||| ||||||||| Sbjct 9250 GTCCCGGAAGGCCTGGCCGTGG---CAGTCCGCGAGACCGGGGCACTGAT-CGGGACACA 9305 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 ||||| |||| || || || || |||| |||||||||||| || | ||| || Sbjct 9306 TGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTC 9365 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||| || |||| || || | ||| ||| ||| ||| || ||||| || || | Sbjct 9366 CATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCA 9425 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG- 213965 |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| Sbjct 9426 CTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGC 9485 Query 213966 --CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || ||||||||||| | ||| | || ||||| | || | ||| ||||| | Sbjct 9486 CTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGAC 9545 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGG 214083 ||||| | || || || ||| || || | |||| || | | |||| | | Sbjct 9546 CGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCG 9605 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGA 214143 |||| || || || || || |||| |||| |||||| || ||| || || || Sbjct 9606 AGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGA 9665 Query 214144 TGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGG 214203 | || | || ||| || | | ||| | |||||| || | ||| || Sbjct 9666 TACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 9725 Query 214204 ACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCC 214263 || ||| | || |||||| || ||| ||| ||||| | ||||||| | |||| Sbjct 9726 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 9785 Query 214264 TGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATC 214322 ||||||||||| | | | ||| | || | ||||| || || ||| | || Sbjct 9786 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC-CACGCGCAGA 9844 Query 214323 AGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGC 214379 ||||||| ||| || | ||| | | ||| | || ||| |||| ||||| || Sbjct 9845 AGCATGTACTGCGGGCGCTCCA---CCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGT 9901 Query 214380 TCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCG 214439 |||| || ||||| || || ||| || || |||| | ||||| || ||| ||| Sbjct 9902 TCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGCTCGTGTCGGACGGCCGCG 9961 Query 214440 TCCAG 214444 || || Sbjct 9962 TCTAG 9966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931452921062400