Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1319 168 1e-36 seq2149 154 3e-32 >seq1319 Length=24917 Score = 168 bits (186), Expect = 1e-36 Identities = 467/708 (66%), Gaps = 11/708 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || || |||||||| ||| | | || || || | |||||| || || || Sbjct 9017 GCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCACAGA 9076 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| |||||||||| |||| || | || || ||| | ||| |||||||||| Sbjct 9077 TTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCCTTG 9136 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| |||| ||| ||||| | ||| | ||| || ||| | || Sbjct 9137 TACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAAGTC- 9195 Query 221894 CTG-GCGCTCACCGTCCTCTTGACT--GCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || | ||| ||| |||||||| || | |||| || | | || ||||| | Sbjct 9196 CTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAA---TATAGGTC 9252 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | | | | ||| || | || || || ||| |||||||||| || Sbjct 9253 CCGGAAGGCCTGGC--CGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGG 9310 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||| | | | || | ||||||| |||||| ||||| || ||||| || | | Sbjct 9311 GACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTCCATAG 9370 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | || |||| ||||||| |||| ||| |||| ||| |||| | ||| Sbjct 9371 AAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCA 9430 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || ||||| ||||||||||||||||| |||| ||| | || || || | |||| || Sbjct 9431 AAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCCC 9490 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| ||||| | | || ||| ||||| | || | || ||||| ||||| Sbjct 9491 CCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTT- 9549 Query 222251 GATCG-ACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309 | ||| || || |||||||||||||| || ||| || | | ||| | | || | Sbjct 9550 GCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAG 9609 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || || || || |||| |||||| ||| || ||||| ||| || Sbjct 9610 GCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACC 9669 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 | || |||||| | | | | ||| || || || || |||||||| Sbjct 9670 AACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTG 9717 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| | |||||||||| ||| |||| || |||||||| |||||| Sbjct 8392 GTACAAGTTCGAGGTGTAGGGTTCGATGCACTCATTGTACCCAAGGATCTGGGCCGTGGA 8451 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 |||||||||||| || |||| ||||| |||||||| ||| Sbjct 8452 GGCGGTGGGCATAGGCGCCAAAAGCAGGGAATTGCGCAGGCCG 8494 >seq2149 Length=43014 Score = 154 bits (170), Expect = 3e-32 Identities = 775/1224 (63%), Gaps = 27/1224 (2%) Strand=Plus/Minus Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCAT 221490 ||| |||||||| || || |||||| || || |||||| ||||| ||| || | Sbjct 34463 GTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTCCGGAGACTCGAATGGGAA 34404 Query 221491 ACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCT 221550 |||| | | ||| |||| |||| ||||| || ||||| |||||||| | ||||| Sbjct 34403 TCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCG 34344 Query 221551 CCTGTTGGAAGCGGCCG-CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 | |||| || ||| | | |||| || || || |||||| |||||| | ||| | Sbjct 34343 CATGTTCGA-GCGCCTGGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGACGCGGTTCA 34285 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTG------GTGATTGAACACCA 221663 |||| | || | || || | || |||| ||| || | || | | Sbjct 34284 GGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGTCGTAAGTGGGCGTCT 34225 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 | ||| ||| | || | || ||| ||| ||| ||||||||| | Sbjct 34224 TCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTTCACGGAGGCCAGGTTGC 34165 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 | || || ||||| || || |||| |||||||| || || || ||| | | Sbjct 34164 AGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCACAGATTGGATGATT 34105 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| |||| || | || || || || | ||| ||||||||| | ||||| Sbjct 34104 TGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGT 34045 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCA 221903 | || ||| ||||||| ||| | |||||||| | |||||| | |||| || | Sbjct 34044 AAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTG-CTGGGCCTTA 33986 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 ||| || ||| | | |||| || || | || |||||| || ||||| | Sbjct 33985 ATAACCT--TGCGTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCT 33928 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | ||| || | || ||||||| || ||| | ||| || | || ||||| | || Sbjct 33927 CGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGT 33868 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 | | || | | ||||||| ||||| || |||| || || | || ||||| | | Sbjct 33867 CGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTG 33808 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 |||| | ||| ||||| ||| || | ||| |||| || ||||| ||||| || | Sbjct 33807 CACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCAT 33748 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| ||||| || |||| ||| | | || |||||| || ||||| || || Sbjct 33747 GCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGT 33688 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | || | ||||||| | ||| || | ||||| | |||||||| ||||| | Sbjct 33687 AGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCG 33628 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 || |||||| | | | |||| | ||| | || | ||| || ||||| | Sbjct 33627 ATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCG 33568 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | ||| || || ||||| |||||| ||||| |||||| || || ||||||| Sbjct 33567 CAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCT 33508 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | | |||| || || || || || | || | | | | ||| || || | Sbjct 33507 CCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAA 33448 Query 222444 GCGTGGGACTGGC--GTGTGTAAAGT---AGCCCCTAGACATCAGATCGTACGTCTCTA- 222497 | || || | || | ||| ||||| ||| ||||| |||| ||| ||||| | Sbjct 33447 GTGTAGGCGTAGCATGCGTGAAAAGTTTGAGC-----GACATGAGATTGTAGGTCTCCAG 33393 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGG 222557 || | | | | ||||| || ||| || || || | |||| ||||| ||||| Sbjct 33392 CGCCGC-GTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCATGATCATGTGCTGGG 33334 Query 222558 GCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 | | ||||| | ||| | | || ||| |||||||| |||||||| || || || Sbjct 33333 GGCGCTCCATAACTACCCCGTTCATCTTAAGA--AGGTACGACTTTTCCAGCGTTTTAAA 33276 Query 222616 CCCAAAGTAGTTGAGGTCAAAGTC 222639 |||||||||| |||||||| Sbjct 33275 GCCAAAGTAGTCATAATCAAAGTC 33252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928765151558400