Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2348 630 7e-176 seq2347 105 7e-18 >seq2348 Length=90098 Score = 630 bits (698), Expect = 7e-176 Identities = 731/980 (75%), Gaps = 8/980 (1%) Strand=Plus/Plus Query 8257 TGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCA 8316 ||| ||||| || | || || || || |||| ||||| || ||| | |||||||| Sbjct 63533 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 63592 Query 8317 ACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGAC 8376 || | | | ||||||| |||||||| | ||| ||| | || || ||||| || || Sbjct 63593 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 63652 Query 8377 ATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCT 8436 ||||| || ||||| |||||||| |||||||| || | ||||| |||||||| ||| | Sbjct 63653 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 63712 Query 8437 GGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCC 8496 ||||| ||| |||| || |||||||| ||||| | ||||||||||| | |||||||| Sbjct 63713 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 63772 Query 8497 GCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTC 8556 || ||| | || || ||||| |||||||||||||||||||| |||||||| || |||||| Sbjct 63773 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 63832 Query 8557 CTCCTTGGCGT-CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCAT 8615 | | || || |||| || ||||| ||||||||||||||| ||||| | || || Sbjct 63833 TTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 63891 Query 8616 GCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCT 8675 |||||||||||| | || || | ||| ||||| || || || || ||| |||||| | Sbjct 63892 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTT 63951 Query 8676 TGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTAC 8735 | || || | || |||||| |||||||||||||||||| | |||||||| ||||| Sbjct 63952 AATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 64011 Query 8736 GTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACAT 8795 ||||||| ||| | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 64012 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 64071 Query 8796 GCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGT 8855 | ||||||||||||||| || || |||||| | || |||||||||||||| || || Sbjct 64072 GGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGT 64131 Query 8856 TACTTCTTCGCTGGTTCGTGAGACCACCGAA-ACCGAG--TCTCAAAACTATGGCTACAA 8912 || ||| | | ||||| || ||| || | | ||| ||||| || ||||| Sbjct 64132 AACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAA 64188 Query 8913 GTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTT 8972 || || |||||||| |||||||||||||| || || || || || |||||||| || || Sbjct 64189 ATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTT 64248 Query 8973 GATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTG 9032 ||||||||||| ||| ||| ||||| || | || || |||||| | ||||| || Sbjct 64249 AATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTG 64308 Query 9033 GCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAA 9092 ||| || || || |||||||| || || || || | || ||||| |||||| | || Sbjct 64309 GCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAA 64368 Query 9093 TGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGC 9152 || |||||||||||||| || || | || | ||||| || ||| ||||||| ||||| Sbjct 64369 CGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGC 64428 Query 9153 AGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAA 9212 ||| | | ||||| || | | ||||||||||| ||||||||| | ||||| ||||| Sbjct 64429 TGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 64488 Query 9213 CTTCCCGCTTGACCTTGCGG 9232 |||||| || || | |||| Sbjct 64489 CTTCCCTCTAGATTTAGCGG 64508 Score = 515 bits (570), Expect = 4e-141 Identities = 730/1021 (71%), Gaps = 4/1021 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 || | | ||||| || || | ||||||| ||||||| ||| | || || ||||| ||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||||||| || ||| | || | |||| | ||||| ||| || ||| | Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTT 4921 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || | ||||| ||||| ||||| || |||||||||||| | | || | ||||| Sbjct 4920 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 4861 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 || ||| | || |||||||| || ||| | || | || ||| | ||| ||||||| Sbjct 4860 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 4801 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || | || || || || | ||||| || || ||||| || ||||| | || | Sbjct 4800 CGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCG 4741 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | | || || || || || ||||| || || ||||| || ||||| || || || || Sbjct 4740 TCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGT 4681 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||| | |||||||| | ||||| | |||||||||||||| || ||||| || Sbjct 4680 TTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGG 4621 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || |||||||| ||||| | ||| | || || || ||||| ||||| || || Sbjct 4620 AGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 4561 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 ||| ||||| |||||||| || || || || | || || || || |||| ||||| || Sbjct 4560 TCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCA 4501 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 |||| ||||||||||||||| | | ||||||| || || || || ||| || Sbjct 4500 TGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC 4441 Query 10474 TTTTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||| | | | || ||| |||||| || ||||| ||||| || || ||| | ||||||| Sbjct 4440 -TTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 4382 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 | || || ||||| |||||||| || ||||| |||||||||||||| ||| | |||| Sbjct 4381 CACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 4322 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 | || || | ||| | ||||| |||| |||| || | ||| | || | || | Sbjct 4321 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 4262 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 | || || || ||||||||||||||| | | || | |||||||| |||||||| || | Sbjct 4261 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 4202 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 ||||||| || |||||| | | ||||||||| || | |||||||||| || |||| Sbjct 4201 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 4142 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT 10832 ||||||| |||| ||||| |||||||| || ||| | || | || || || || | || Sbjct 4141 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 4082 Query 10833 A 10833 | Sbjct 4081 A 4081 >seq2347 Length=4856 Score = 105 bits (116), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| Sbjct 770 CGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAAA 711 Query 15462 TCCTGTATTCCCGACT 15477 |||||| |||||||| Sbjct 710 TCCTGTCATCCCGACT 695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 26435 ATAACTCAATCCCAAGTAGCTCAGTGGCAGAGCCGCCGACTGTTAATCGGCTGGTCGCTG 26494 |||| | ||||| ||||||||||||| ||||| || ||||||| || ||||||||| Sbjct 4620 ATAAATAAATCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTG 4679 Query 26495 GTTCAAATCCAGCCTTGGGAGTT 26517 |||||| |||||||| ||||||| Sbjct 4680 GTTCAAGTCCAGCCTGGGGAGTT 4702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516435711840000