Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2348 138 7e-27 seq6464 95.1 8e-14 seq802 93.3 3e-13 >seq2348 Length=90098 Score = 138 bits (152), Expect = 7e-27 Identities = 150/197 (76%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 |||||| | || || |||||||| || |||||||||||||| |||||| | |||||||| Sbjct 7678 AGTAACAAAAGCTGTTATTACTGTCCCGGCATATTTTAATGACTCTCAAAGACAAGCAAC 7619 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||||| || || | ||||||||| | | || |||||||||| |||||||||||||| Sbjct 7618 AAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAACAGC 7559 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTT 474906 || || ||||||||||| | || || || || || ||| || ||||||| || Sbjct 7558 CGCAGCTCTTGCTTATGGGTTAGACAAAAAATC---AAATGAAACAA---TTTTAATTTT 7505 Query 474907 TGATT---GTGGAGGTA 474920 ||||| |||| |||| Sbjct 7504 TGATTTAGGTGGTGGTA 7488 Score = 105 bits (116), Expect = 4e-17 Identities = 258/389 (66%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 475771 TAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCA 475830 ||||||| ||| || || ||||||||||||| ||| || ||||||||| | | Sbjct 7009 TAAAAAGCCTAATTTAACGGTTAATCCTGATGAAGTTGTAGCTGTTGGAGCTGCGATTAA 6950 Query 475831 AGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGT 475890 | ||| |||| | ||| |||| |||| | | || || | | ||||| Sbjct 6949 TGGAGCAGTTTTGGCTGGT-----------GAAATTAAAGA-TGTTTTATTATTAGACGT 6902 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 ||| ||| | || ||||| |||||||| |||| || | ||||||| | ||||| || Sbjct 6901 AACACCATTATCTTTAGGAGTTGAAACAATTGGTGGTTTAATGACTAGAATGATTGAAAG 6842 Query 475951 AAATACTCCTATCCCATGCAA-AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAA 476009 |||||| | || ||| |||| |||| | || |||||| || || || ||| Sbjct 6841 AAATACAACAATTCCA-GCAACAAAAACTGAAACATTTTCAACAGCCGAAGACAACCAAC 6783 Query 476010 CAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAAC 476069 ||| ||| || || | | |||||||| | | | || |||||| || | Sbjct 6782 CAAAAGTAGATATTCATGTACTACAAGGTGAACGCTTACTTGCTTCAGATAACAAAAGTT 6723 Query 476070 TTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 | ||| ||| | |||| |||| | |||| || |||||||| || |||||||||| Sbjct 6722 TAGGACATTTCGAACTTGGGAATATTTCAGCTGCCCCTAGAGGAGTACCACAAATTGAAG 6663 Query 476130 TTACTTTTGATATTGATGCAAATGGTATT 476158 | || |||||||| || ||| |||| ||| Sbjct 6662 TAACATTTGATATAGACGCAGATGGAATT 6634 Score = 100 bits (110), Expect = 2e-15 Identities = 214/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Plus Query 290647 AACAAAATTCATTATTTCATAATCAATATCTTCTCCACCCAAATAAGAATTACCTGTCAT 290706 |||| | |||||||| | | |||| ||| || ||||| || | || |||| | | Sbjct 7375 AACATACTTCATTATAGCGGAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGT 7434 Query 290707 AGCTAATGTTCTAAATAAACCGTCATTAATATTCATTAAT-GAAATATCTAATGTTCCTG 290765 |||||| | ||||| ||| || || ||| ||| |||| || ||||| || Sbjct 7435 TGCTAATACTTCAAATACACCATCCCCAAC-TTCTAAAATAGAAACGTCAAATGTACCAC 7493 Query 290766 CACCAAAATCGTATATAATAACATTACCTCCATTTTTATTTGTCCAAGTTTTGCTTCCAA 290825 |||| ||||| | || ||| ||| ||| ||||| | ||||| || || Sbjct 7494 CACCTAAATCAAAAAT--TAAAATTG-------TTTCATTTG---ATTTTTTG--TCTAA 7539 Query 290826 GACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTG 290885 ||||| | | | || |||||||||||||||||||| | || ||| || | |||| Sbjct 7540 C-CCATAAGCAAGAGCTGCGGCTGTTGGTTCATTTATAATACGTAGTACTTCTAATCCTG 7598 Query 290886 CAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTG 290945 ||||||| | | ||| ||||| || | ||| | ||||||||||| || ||||| | Sbjct 7599 CAATTTTACCTGCGTCTTTTGTTGCTTGTCTTTGAGAGTCATTAAAATATGCCGGGACAG 7658 Query 290946 TAATAACAGCTTTT 290959 |||||||||||||| Sbjct 7659 TAATAACAGCTTTT 7672 >seq6464 Length=44462 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || |||||||| || || || |||||||| || || || ||||| Sbjct 38432 ATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTT 38491 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||| || |||||||| || ||| ||||| || || || | | | | ||| | ||| Sbjct 38492 GTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAG-TAA 38550 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||||||||||||||| Sbjct 38551 TGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTG 38584 >seq802 Length=4370 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || |||||||| || ||||| || || || ||||| || ||||| || |||||| Sbjct 332 TCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 391 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAAT 480736 |||||||||||||| || ||| ||| || ||||| || | | | | ||| || || Sbjct 392 TCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAA-TGTGAT 450 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 451 GGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267884941315280