Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2348 733 0.0 seq2347 100 3e-16 >seq2348 Length=90098 Score = 733 bits (812), Expect = 0.0 Identities = 755/976 (77%), Gaps = 16/976 (2%) Strand=Plus/Plus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||| |||| ||||| || ||||| | || | ||||||||||| || | ||||| ||| Sbjct 63533 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGAT-CCC 63591 Query 160945 TGC-TTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGA 161003 | | || | | ||||| | || |||||||| || ||| | | || || || || || Sbjct 63592 TACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGA 63651 Query 161004 CATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTC 161063 ||||| || || |||||||| || ||||| || || | || ||||||||||| ||| | Sbjct 63652 TATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCAC 63711 Query 161064 TGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGC 161123 ||||| ||||| || |||||||||||| ||| | ||||||||||| | |||||||| Sbjct 63712 AGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGC 63771 Query 161124 AGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCAC 161181 || ||||| ||||||||||| |||||||||||||||| |||||| || || || ||| Sbjct 63772 TGC--GTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACAC 63829 Query 161182 TTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGG 161239 ||| | | || | || |||| ||||||| ||||| ||||||||| |||||| | | Sbjct 63830 TTCTTATTAGGTGTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAG 63887 Query 161240 GAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGT 161299 | |||||||||||||||| |||||| | ||| ||||| || |||||||| |||||||| | Sbjct 63888 GGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTAT 63947 Query 161300 TCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTG 161359 || | | || || |||| |||||| |||||||||| |||||| | || ||||||| Sbjct 63948 TCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTG 64007 Query 161360 GTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCC 161419 |||| ||||||| |||| | || ||||||||||| ||||||||||| |||||||| |||| Sbjct 64008 GTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCC 64067 Query 161420 ATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGC 161479 ||||| || || || ||||||||||| || ||| | |||||||||||||| ||||| | Sbjct 64068 ATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTC 64127 Query 161480 TGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGA-GTCCCAG--AACTATGGTT 161536 | || || ||| | | |||||||| ||| ||| || | | ||||| |||| Sbjct 64128 TTGTAACATCTAGTTTAATCCGTGAAACT---GAAGACGGTGTATCTGCTAACTACGGTT 64184 Query 161537 ACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTC 161596 |||| || || ||||||||||| || ||||||||||| ||||| ||||| ||||| || | Sbjct 64185 ACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGAC 64244 Query 161597 GTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTG 161656 || | || ||||||||||| ||||||||||| || | | ||||||||| | |||| Sbjct 64245 GTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTG 64304 Query 161657 CTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACC 161716 ||||||| ||||| || |||||||| ||||| || || | ||||| |||||||||||| Sbjct 64305 CTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACT 64364 Query 161717 TGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCT 161776 | || || |||||||||||||| || | |||||||| || ||| || |||||||| | Sbjct 64365 TAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTT 64424 Query 161777 GGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTC 161836 |||| ||| || |||||||||||| | | || |||||||| |||||||| || || || | Sbjct 64425 GGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGC 64484 Query 161837 ACAACTTCCCTCTTGA 161852 ||||||||||||| || Sbjct 64485 ACAACTTCCCTCTAGA 64500 Score = 583 bits (646), Expect = 1e-161 Identities = 740/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 162249 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGT 162307 || || || ||| | || ||| || | ||||| ||||| ||| | |||| || || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCTGT 4909 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 || || || ||| | |||||||||||| | | | ||||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 162368 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 162427 ||| || || | || ||| ||| | || ||| | ||||||||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 162428 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 162486 || |||| | | || || ||| || || || || |||||| | || || ||| | |||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 162487 TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 162546 ||||||| || ||||| ||||| || ||||| ||||| || ||||||||| ||| || Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 162547 TTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 162606 | ||||||||||| |||||| | |||||||| || || || || || ||||| | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 162607 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACA 162666 | ||||||||||| | ||| | ||||| |||||||||||||| || ||||| || |||| Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 162667 TGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAG 162726 ||||||| |||||||| || | ||||||||| | | ||||| |||||||||| || | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 162727 TTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCC- 162785 | ||||| ||| | | ||||||||| || || || || || || ||| || || Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 4431 Query 162786 ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTC 162845 ||||| |||||||| ||||| ||||| || |||||| | ||||||||||| ||||| Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 162846 GGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATG 162905 ||| |||||||| |||||| |||||| | |||||||| ||| | |||||||| || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 162906 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGAC 162965 ||| | |||||||||||| | ||||| | || | || | || | | || || ||| Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 4251 Query 162966 TTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAG 163025 |||||||||||||| ||||||| || ||||| || || ||||| || |||||||| || Sbjct 4250 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 4191 Query 163026 AACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAG 163085 || || | | || ||||| || || ||||| | || || ||||||||| ||||| Sbjct 4190 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 4131 Query 163086 AACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGATA 163135 || ||||| ||||| || ||||| || ||| | || ||||| || | ||| Sbjct 4130 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 >seq2347 Length=4856 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 157687 TTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTC 157746 ||||||| |||||||||| ||||||||||| ||||||||||||| | ||| ||||||| Sbjct 773 TTACGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTC 714 Query 157747 GAATCCTGTCACCCCGACTT 157766 |||||||||| |||||||| Sbjct 713 AAATCCTGTCATCCCGACTT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547700230677600