Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2348 480 2e-131 >seq2348 Length=90098 Score = 480 bits (532), Expect = 2e-131 Identities = 699/979 (71%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| |||||||| || || ||||| |||||||| ||||| | || | | | Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGA 17953 || | ||||| | ||||||||| || | || | ||| ||| | |||| || Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTG-GCTATCAACAACTGA 64388 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 |||||||||||||||||| || | || || ||||| ||| ||||| | || || | Sbjct 64387 TTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAA 64328 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGTTAA 18072 ||| || | || ||||||||||| |||||||| |||| | | | || ||||| | Sbjct 64327 CCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGTTGA 64269 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132 | || || || |||||||| | | |||||||| || || || || || || || || | Sbjct 64268 AACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAG 64209 Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192 | ||||||||||| |||||||| || || ||||| ||| || || ||||| | Sbjct 64208 TTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCAC 64149 Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 || | || || |||||| || ||||| ||| |||||||| |||||| || | Sbjct 64148 GGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACA 64089 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || |||||||| ||||||||| || |||||||| || |||||||| |||||||||| Sbjct 64088 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 64029 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | |||||||| ||||||||||| ||||| | |||||||||||||||||| || |||| Sbjct 64028 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 63969 Query 18373 GTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAA 18432 |||| | || |||| | ||||||| || || |||||||| || || |||| | Sbjct 63968 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 63909 Query 18433 CACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAG 18492 | ||||||| || ||||| |||| | || ||||||||||||| ||||||||||| Sbjct 63908 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 63849 Query 18493 CTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 18552 || | || | | ||||| || || | ||||| || || || ||||| || | || Sbjct 63848 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 63789 Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612 | ||||| | | ||||||||||| | |||||||||||||| ||| || |||||||| Sbjct 63788 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 63729 Query 18613 ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT 18672 || | | || |||| || ||||||||||| || | | | ||| | || || | Sbjct 63728 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 63669 Query 18673 CACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA--AAAATGC-TG 18729 |||| |||||||| || || || ||||| || || | || || || | || || || Sbjct 63668 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 63609 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 ||||| ||||| | || ||||||||| | || || ||||| || | ||| | |||| Sbjct 63608 TAGCT---GTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 63552 Query 18790 TGTTTGTACTCGTAACCCA 18808 | | ||| || || | ||| Sbjct 63551 TTTCTGTGCTAGTGATCCA 63533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151306073224840