Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq2348 480 2e-131
>seq2348
Length=90098
Score = 480 bits (532), Expect = 2e-131
Identities = 699/979 (71%), Gaps = 10/979 (1%)
Strand=Plus/Minus
Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894
||||||||||| |||||||| || || ||||| |||||||| ||||| | || | | |
Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447
Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGA 17953
|| | ||||| | ||||||||| || | || | ||| ||| | |||| ||
Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTG-GCTATCAACAACTGA 64388
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
|||||||||||||||||| || | || || ||||| ||| ||||| | || || |
Sbjct 64387 TTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAA 64328
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGTTAA 18072
||| || | || ||||||||||| |||||||| |||| | | | || ||||| |
Sbjct 64327 CCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGTTGA 64269
Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132
| || || || |||||||| | | |||||||| || || || || || || || || |
Sbjct 64268 AACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAG 64209
Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192
| ||||||||||| |||||||| || || ||||| ||| || || ||||| |
Sbjct 64208 TTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCAC 64149
Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252
|| | || || |||||| || ||||| ||| |||||||| |||||| || |
Sbjct 64148 GGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACA 64089
Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312
| || |||||||| ||||||||| || |||||||| || |||||||| ||||||||||
Sbjct 64088 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 64029
Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372
| |||||||| ||||||||||| ||||| | |||||||||||||||||| || ||||
Sbjct 64028 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 63969
Query 18373 GTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAA 18432
|||| | || |||| | ||||||| || || |||||||| || || |||| |
Sbjct 63968 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 63909
Query 18433 CACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAG 18492
| ||||||| || ||||| |||| | || ||||||||||||| |||||||||||
Sbjct 63908 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 63849
Query 18493 CTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 18552
|| | || | | ||||| || || | ||||| || || || ||||| || | ||
Sbjct 63848 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 63789
Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612
| ||||| | | ||||||||||| | |||||||||||||| ||| || ||||||||
Sbjct 63788 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 63729
Query 18613 ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT 18672
|| | | || |||| || ||||||||||| || | | | ||| | || || |
Sbjct 63728 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 63669
Query 18673 CACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA--AAAATGC-TG 18729
|||| |||||||| || || || ||||| || || | || || || | || || ||
Sbjct 63668 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 63609
Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789
||||| ||||| | || ||||||||| | || || ||||| || | ||| | ||||
Sbjct 63608 TAGCT---GTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 63552
Query 18790 TGTTTGTACTCGTAACCCA 18808
| | ||| || || | |||
Sbjct 63551 TTTCTGTGCTAGTGATCCA 63533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151306073224840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |