Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2348 673 0.0 >seq2348 Length=90098 Score = 673 bits (746), Expect = 0.0 Identities = 724/961 (75%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||||||||| |||||||| |||||||| ||||||||||| | | |||| ||| Sbjct 64500 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 64441 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 |||| || ||| ||||| ||||| | ||||||||| || | ||||| | || |||||| Sbjct 64440 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 64381 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 |||||||||||||| | |||||| ||||| ||||||| ||||| || || ||||||||| Sbjct 64380 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 64321 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 || || ||||| | ||||||||||| |||| Sbjct 64320 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 64261 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 ||||||||||| ||||| || |||||||| || || |||||||||||||| || ||||| Sbjct 64260 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 64201 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCA--GT-TTCAGTCGTCTCACGAACC 103537 |||||||| || |||||||| ||||| |||| || || |||||| ||||| | Sbjct 64200 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCACGGATT 64144 Query 103538 AGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCA 103597 | || || ||||| ||||| ||||| |||||||| | || ||||| || || ||| Sbjct 64143 AAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCA 64084 Query 103598 GCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGC 103657 ||||| || ||| ||||| |||||||| |||||||| ||||| |||||||| || | | Sbjct 64083 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 64024 Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCA 103717 ||| ||||||| || || || ||||| ||||||||| |||| ||||| |||||| || Sbjct 64023 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 63964 Query 103718 AAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAG 103777 | ||||| | ||||||||||| || || || || ||||| ||| | || || | Sbjct 63963 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 63904 Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| || ||||| || | ||||||| | |||||| ||||||||||| || ||| || Sbjct 63903 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 63846 Query 103838 ATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACT 103895 | | | | | |||||| ||||||||||||||| ||||||||||||| || ||||| | Sbjct 63845 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATT 63786 Query 103896 CATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGG 103955 | || | ||| || |||||||||| || |||||||||| |||||| ||||| || | Sbjct 63785 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTG 63726 Query 103956 GAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCAC 104015 ||| ||| ||||| | ||| |||||||| ||||| | ||||| ||||| || ||||||| Sbjct 63725 GAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 63666 Query 104016 GAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGGTTG 104075 | || || |||||||| || ||||||||||| | |||||| | |||||||||| | || | Sbjct 63665 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 63606 Query 104076 CCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTG 104135 | | || | || |||||||| | |||||||||||||| | || | |||||| | || Sbjct 63605 CTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTG 63546 Query 104136 T 104136 | Sbjct 63545 T 63545 Score = 569 bits (630), Expect = 3e-157 Identities = 742/1021 (73%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || ||||| || | ||| || ||||| || || |||||||| |||||||| ||| Sbjct 4081 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 4140 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 || || || |||| ||||| | | |||||| || |||| ||| || || || ||| Sbjct 4141 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 4200 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || ||||||||||| ||||| | | |||||| |||||||||||||| || Sbjct 4201 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 4260 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | | ||| | || | ||| | ||||| | ||||||||||| | ||| | || ||| Sbjct 4261 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 4320 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | ||| |||||||| | ||| | || ||| ||| |||| |||||| ||||| Sbjct 4321 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGT 4380 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 |||||||| | ||| ||||| |||||||||||||| ||||| |||||| | ||| Sbjct 4381 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 4440 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||| || || || |||||||||||| | | ||||| || ||||| | || Sbjct 4441 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 4500 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| || | ||||| || || | || ||||| ||||||||||| |||||||| Sbjct 4501 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 4560 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || || |||||||||||||| || |||| ||| | |||||||| || || |||||||| Sbjct 4561 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 4620 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || |||||||||||||| | ||||| | ||||||||| | || ||| Sbjct 4621 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 4680 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 || || || |||||||| || || || ||||| ||||| ||||||||||| || | | Sbjct 4681 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 4740 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 | ||| | || ||||| || || || ||| ||||| | ||||||| || || | || Sbjct 4741 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 4799 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 ||||||| ||| | ||| || | ||| | ||| | ||||||||||| || || || Sbjct 4800 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 4859 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| | || | | |||||||||||| | ||||| ||||| ||||| | || Sbjct 4860 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 4919 Query 102543 AAGGAAATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAG 102601 | ||| || ||| || || | |||| ||| || | || || || ||||| || ||| Sbjct 4920 TAAGAAGTT-GCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAA 4978 Query 102602 CAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTA 102661 |||| || || || || | ||| || |||| ||| ||| | || || ||||| | | | Sbjct 4979 CAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAA 5038 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721 | || |||||||| | ||| || || ||||||||||| | ||||||||| | | ||||| Sbjct 5039 GACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAA 5098 Query 102722 A 102722 | Sbjct 5099 A 5099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633459276208800