Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2348 529 5e-146 >seq2348 Length=90098 Score = 529 bits (586), Expect = 5e-146 Identities = 717/991 (72%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || ||||||||||| ||||| || || ||||| || || | || | | |||||| Sbjct 64500 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 64441 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | |||||||||||| ||||||||||| | || | | | | | |||||||| Sbjct 64440 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 64381 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||| || || |||||||| ||||| || | ||||| |||| ||||| ||| Sbjct 64380 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 64321 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||||||| ||||| ||||| | ||||| || | | ||| || || || || || || Sbjct 64320 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 64261 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| | || ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 64260 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 64201 Query 21777 TCTTGACCAAACTTGTAACCATAGTT--CTGTGAAACC-TCTTCAGTCGTCTCACGAATG 21833 ||||| ||||| |||||||| ||||| | | | ||| |||||||| ||||| || Sbjct 64200 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCACGGATT 64144 Query 21834 AGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCG 21893 | || || || || ||| ||||| ||| ||| ||| |||||||| || || Sbjct 64143 AAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCA 64084 Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| ||| || || || ||||||||||| ||||| || || ||||| || | | Sbjct 64083 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 64024 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 ||| ||||||| || || || || || || |||||| ||||||| || || ||||| Sbjct 64023 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 63964 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || |||| | ||| || ||| | || || || || ||||| ||| | || || || Sbjct 63963 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 63904 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | |||||||| || |||||||||||||| || ||||||||||| |||| Sbjct 63903 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCAAGC 63845 Query 22134 -ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTC 22192 || || | | |||||| ||||| |||||| | ||||| |||||||| |||||||| Sbjct 63844 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTC 63785 Query 22193 ATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGG 22252 || | | ||||||||||||| |||||||||||| | || || || ||| || || Sbjct 63784 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGG 63725 Query 22253 AACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCG 22312 || || || |||| || |||||||| || || || || || ||||| || ||||| || Sbjct 63724 AATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 63665 Query 22313 GATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||| |||||||| || || || ||||| | | || ||||| || || || ||||||| Sbjct 63664 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 63605 Query 22373 -GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAG 22431 | || | | | || ||||| | || |||||||| || | || | |||||| | | Sbjct 63604 TGTTAATAATGTA-GGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTG 63546 Query 22432 TAGAGGTGACCCAGGAACAAAACTGCTCCCA 22462 | |||| ||| || || || ||||||| Sbjct 63545 TGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 63515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146196089530800