Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2348 668 0.0 >seq2348 Length=90098 Score = 668 bits (740), Expect = 0.0 Identities = 717/943 (76%), Gaps = 4/943 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| ||||| ||||||||||| || || | ||| ||||| ||||||||||| || | Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | || ||| |||| || || | || || || |||||||||||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACC-TTGGCTATCAACAACTGA 64388 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| |||||||| || || ||||||||||||||||||| || || | || ||||| Sbjct 64387 TTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAA 64328 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | || |||||| || || | |||| ||||||||| | | | |||||||||||| Sbjct 64327 CCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAA 64268 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 || || |||||||| | ||| ||||||||||||||||| ||||| |||||||| || Sbjct 64267 ACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGT 64208 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||||||||||||| || || ||||| ||||| || | ||| ||||| | Sbjct 64207 TTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCACG 64148 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||||| | |||||| |||||||||||||||||||| |||||||||||| || |||| Sbjct 64147 GATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACAC 64088 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || || || || ||||| ||||| || ||||| |||||||| || ||||||||||| || Sbjct 64087 ACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATAC 64028 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 ||||| |||||||||||||| |||||||| | ||||||||||||||||| ||| || Sbjct 64027 TAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTG 63968 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 || | |||||| | ||||||||| || ||| |||| |||||| ||||| |||| || Sbjct 63967 TCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTAC 63908 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 | |||||||||||||| ||||| | ||| |||||||| | | ||||||||| Sbjct 63907 GAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCA 63848 Query 124708 TGAAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACC 124766 | | ||| |||||| ||||| || | ||| | || ||||||||||| || || | || Sbjct 63847 AGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 63789 Query 124767 ATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATG 124826 |||| || |||| || |||||||| | |||||||||||| | || |||||||| || Sbjct 63788 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 63729 Query 124827 ATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTT 124886 ||||| ||| ||||| | ||| |||||||| || ||||| | || || || ||||||| Sbjct 63728 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 63669 Query 124887 CTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTG 124946 | | ||| || |||||||| || ||||||||||| || || || | |||||| || || Sbjct 63668 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 63609 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACC 124989 ||||| | ||| || ||||||| |||||| |||||||| Sbjct 63608 TAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACC 63566 Score = 576 bits (638), Expect = 2e-159 Identities = 761/1051 (72%), Gaps = 27/1051 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||||||||| ||||| ||||| Sbjct 4083 TTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGTTG 4142 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGA 122984 ||| | | |||||||| ||| || ||||| || || |||| | || || ||||||| Sbjct 4143 GTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGA-TATTTTTAGTATAGA 4201 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 |||| || || ||||| ||||| ||||| | | |||||||||||||||||| ||||||| Sbjct 4202 AAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCTC 4261 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | | ||| | ||||| |||||| ||||| | ||| |||||| | ||| | || |||| Sbjct 4262 TTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGAA 4321 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||| | ||| || | | | |||||||||||| || | |||||| || |||| Sbjct 4322 CAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGTG 4381 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 ||||||||||||||||||| | ||| ||||||||||||| ||||| || ||| | Sbjct 4382 ACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAAG 4441 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | || | | ||| || |||| | |||| Sbjct 4442 CACGGAATGT---------ATTCGCAGCATCACCAT------------CTTCGAATAATG 4480 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||| | || || || |||||||| ||| ||| || ||| ||||||| |||||||| | Sbjct 4481 TGTTTTCTACAGTAGCTCCATGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTA 4540 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 ||||||||||||| |||||||| | ||| ||| ||||||||||||| |||||| | Sbjct 4541 CACCCATCATGTGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGA 4600 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGC-TGACCTAGT 123463 | || || || ||||| || || || || || ||||||||||| ||| || |||| Sbjct 4601 ATCGGAAAATAGCTGCAACTCCAAAACTAGGAGCAAAGAACCAACT-TGCTTGTCCTAAA 4659 Query 123464 GGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 |||||||| | || | | ||| ||||||||| | || ||||| | ||| || Sbjct 4660 GGATAGATTAAGAATACAGAAACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTA 4719 Query 123524 TAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAG 123582 || || | ||| |||||||| | || || |||||||||| | | || ||| || || | Sbjct 4720 TACGGACGAATACCTACAAGACGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAA 4778 Query 123583 TCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAAC 123642 |||||| | ||||||||||| ||||| |||||| || || | ||| | ||||||| Sbjct 4779 TCCAAATGCCCCATGTAATGCGACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGT 4838 Query 123643 GAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 || ||||||||| || |||||||| | || || | ||||||||| | | Sbjct 4839 AAAATCTCCTTGTGCCTCTGGTCCCCATAATAAGATCAATGAATGACCCATACTATTTGC 4898 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 |||||| || || ||| | ||||||||||| |||||| | || ||||| || | || Sbjct 4899 AGGTGTTGATACAGCTACAGTTAAGAAGTTGCATCCCTCTAAGTAAGAAGAAGCTAATCC 4958 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 |||||| ||||| |||||||| || ||||| ||| ||||| ||||| | || ||| | Sbjct 4959 ATGTGTGTACCAAGATGTAACAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAA 5018 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 || || | | ||||||||| ||||| || || ||||| |||||||||| ||||| Sbjct 5019 TGCTGTTGGAAATAATAAAAGACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAA 5078 Query 123883 CCAGTCGTCAAGAACATCAAACCAACCTCTT 123913 |||||| || | | ||||| ||||||| Sbjct 5079 CCAGTCATCGACTAAGTCAAATAGACCTCTT 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578948750887200