Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2348 711 0.0 >seq2348 Length=90098 Score = 711 bits (788), Expect = 0.0 Identities = 731/949 (77%), Gaps = 10/949 (1%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | |||||| || || || | || | | |||||||||||| | Sbjct 64494 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATA 64435 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||| ||||||||||||| ||||||||| || ||||| || || || ||||||||| Sbjct 64434 ATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTGAAGTTG 64375 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 || ||||| | ||||| ||||| ||| | ||||| || || |||||||| || ||| Sbjct 64374 AATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATACCTACA 64315 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| | ||||||||| || | ||||||||||||||| || |||||| Sbjct 64314 ACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCGTATTGG 64255 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 ||||| ||||| || ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct 64254 AAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 64195 Query 27046 CCGAACTTATAACCATAGTT--CTGTGACTCAGT-TTCAGTCGTCTCACGGACGAGTGAA 27102 || || || ||||| ||||| | | || | || |||| || ||||||| | | Sbjct 64194 CCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCA---GTTTCACGGATTAAACTA 64138 Query 27103 GATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACA 27162 ||||| || ||| || ||||| ||| ||| | ||||||||| || || ||||||||| Sbjct 64137 GATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCAGCAACA 64078 Query 27163 CCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAG 27222 || ||| ||||| ||||||||||| || ||||||||||| |||||||| | |||| || Sbjct 64077 CCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAG 64018 Query 27223 TTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGA 27282 || ||||||||||||||||| | ||||||| |||| ||||| |||||| |||| || Sbjct 64017 TTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCGATTGGG 63958 Query 27283 TAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCAT 27342 || | | |||||||||||| || ||||| |||||||| || | ||||| | ||||| Sbjct 63957 TAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAA 63898 Query 27343 GGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG--ATGC 27400 |||||||| |||||||| || |||||||| ||||||||||| | |||| || | | Sbjct 63897 GGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT-AGCA-AGCTACAC 63840 Query 27401 CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGA 27460 | | | |||||| || ||||| |||||| ||||||||||||| || | ||| || || | Sbjct 63839 CTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTA 63780 Query 27461 GTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAA 27520 || || |||||||| | |||||||||||| | ||| || || || |||||||| | || Sbjct 63779 CAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGGAATAA 63720 Query 27521 CTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATAC 27580 | ||||| | || |||||||| || || | |||||| ||||| || |||||||| |||| Sbjct 63719 CCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGGATAC 63660 Query 27581 CGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTA 27640 | || ||||| || || |||||||||||||| |||| ||||||||| || |||| || Sbjct 63659 CATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTA 63600 Query 27641 ACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 | | ||| |||||||| | |||||||||||||| | || |||||||| Sbjct 63599 ATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 63551 Score = 468 bits (518), Expect = 7e-127 Identities = 693/977 (71%), Gaps = 4/977 (0%) Strand=Plus/Plus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 ||| ||||| ||||||||||| | ||||||| | | || | ||| || || Sbjct 4125 AAAATTTTCATGTGGTTGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAA 4184 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 |||||||| || ||||| || ||| | ||||||||| ||||||| ||||||| Sbjct 4185 GATATTTTTAGTATAGAAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGA 4244 Query 23549 CACAAAATCATAAGCACG-AAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCC 23607 ||||| ||||| || | ||| |||| || || | | || |||| |||| || Sbjct 4245 TACAAAGTCATATGCTCTTAAGTTTAATGCTAAACCTACT-ATACCAAAAGAACTTGTCC 4303 Query 23608 AAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACG 23667 | | ||| | || |||||||| ||||| ||||| || | |||||| || || ||| | Sbjct 4304 ATAAACCTGTTACTGGAACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAG 4363 Query 23668 CAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCT 23727 |||| || || ||||||||||| || | || ||||| ||||| ||||| || || || Sbjct 4364 CAACACCAAAAATTTGTGACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTG 4423 Query 23728 CCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTAT 23787 || || | ||| || || || || || || |||||||| | | ||| | Sbjct 4424 ATTGTGTTGGTGTGAAAGCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGT 4483 Query 23788 TCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTC 23847 | || |||||| |||||||||| ||||| | ||||| || || | || || || || | Sbjct 4484 TTTCTACAGTAGCTCCATGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACAC 4543 Query 23848 CCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACC 23907 ||||||| ||||| || || || ||||||||||| || || || | ||| | ||||| | Sbjct 4544 CCATCATGTGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATC 4603 Query 23908 TGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGAT 23967 |||||| || ||||| || ||||| || |||||||||||| || ||||| ||||||| Sbjct 4604 GGAAAATAGCTGCAACTCCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGAT 4663 Query 23968 AGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGG 24027 |||| | ||||||||| |||||||| || ||||| || ||||| ||||| ||||| || | Sbjct 4664 AGATTAAGAATACAGAAACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACG 4723 Query 24028 GACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAA 24087 |||| || || | ||||| || | |||||| || ||||| || || || | | ||| Sbjct 4724 GACGAATACCTACAAGACGAGCAATTTCAAATTGTCGTAAACAGAATCCAATTAATCCAA 4783 Query 24088 AGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGT 24147 | || || || | || ||||| | ||| | || || | ||| ||||| || ||| | Sbjct 4784 ATGCCCCATGTAATGCGACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAAT 4843 Query 24148 CCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCG 24207 | ||||| | ||| || ||||| | || | | |||||||||||| | ||||| | Sbjct 4844 CTCCTTGTGCCTCTGGTCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTG 4903 Query 24208 TCGAGACAGCTGCCGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 | || |||||| | || | ||||| ||| ||||| | || ||| ||| | |||||| Sbjct 4904 TTGATACAGCTACAGTTAAGAAGTT-GCATCCCTCTAAGTAAGAAGAAGCTAATCCATGT 4962 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 ||||||||| |||||||||| || || || | ||| || |||| |||||| | || Sbjct 4963 GTGTACCAAGATGTAACAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCT 5022 Query 24327 GTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAG 24386 || |||| | || || || |||||||| | ||| || || ||||| ||||| | |||| Sbjct 5023 GTTGGAAATAATAAAAGACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAG 5082 Query 24387 TCGTCCAAGATGTCAAA 24403 || || | | |||||| Sbjct 5083 TCATCGACTAAGTCAAA 5099 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | ||| |||| | |||||| | ||||| ||||||||||| | || Sbjct 23788 TCTTCTTGATTTGTTAAAATTTGACAATCAGATGCGGGATAAGCAACACAAGTTAATACG 23847 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || |||||| ||| |||||| || || || |||||||| || ||| || | ||||||| Sbjct 23848 AATCCTTCTGCAACTTGATCGTCTTCTAAAAACGACTGTTCTGATTGATCAATTGTACCA 23907 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 ||| | |||||||||| |||||| | ||| | | |||||| || || ||| Sbjct 23908 CCTACTACACGTCCTGCACAAGTTGAACAAGAACCAGATCTACAAGAATAAGGTAGTTCA 23967 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACAA 32848 | || ||| ||||| ||||| | ||||||| ||| ||| ||||| Sbjct 23968 AATCCGTTTTCTTCTGCAGCATCTAAAATGTATTCATCGTCATCACAA 24015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665437333855200