Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2149 170 2e-37 seq441 114 2e-20 seq4979 87.8 2e-12 >seq2149 Length=43014 Score = 170 bits (188), Expect = 2e-37 Identities = 588/903 (65%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||||| || |||||||| | ||||| || || ||| || |||| | Sbjct 33249 CGGGACTTTGATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAG 33308 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | | || | | ||||| ||| ||| ||||| ||||||| || ||||| || ||| Sbjct 33309 ATGAACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATC 33368 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| || ||||||| | | ||||||| ||| | ||||| | | ||| Sbjct 33369 CACAAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTC 33428 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | || || || || || || |||||||| || ||||| | || || | ||| ||| Sbjct 33429 ACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGC 33488 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| | ||| ||||||||||| ||| |||| ||||| | || || | | | || Sbjct 33489 TTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGC 33548 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAA 75486 || || || || | || || || ||||| | |||||| | | | || | | Sbjct 33549 GCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGA 33608 Query 75487 TAAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 | ||| | ||||| || | || || || | || || | || ||||| ||| Sbjct 33609 GA---CTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGC 33665 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATC 75601 || || |||| || || ||||| || | || |||| ||| |||||||| ||| || Sbjct 33666 GTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTC 33725 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAAC 75661 || ||||| | || || |||||||| || ||| | || ||||| || | || ||| Sbjct 33726 GCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAAC 33785 Query 75662 CAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || |||| || | ||| | | ||||| || | |||| |||| || ||||| Sbjct 33786 CACGGCAACGAGTTGGAGC-GTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCT 33844 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 |||||| ||| || ||| | || | ||||| ||||| || || || || || Sbjct 33845 GTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCC 33904 Query 75781 AGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA 75840 || || | |||| | || ||||||||| | |||||| | | || | ||| || Sbjct 33905 GGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACG-AGAAGA 33963 Query 75841 G-GGTAGAGC---CAATGCGACT--GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 | || | ||| ||| | | | | ||||| || | ||| || ||||| | Sbjct 33964 GTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGC-----TCTGGTTCGCGATTCTGGA 34018 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || ||| |||||| || || || || ||||| | |||||| || || ||| ||| Sbjct 34019 CTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATC 34078 Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 ||||| |||| ||||| || ||||| || ||||| |||||||| || | ||||| Sbjct 34079 AAACCAGCAGAACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTA 34138 Query 76015 CAC 76017 ||| Sbjct 34139 CAC 34141 >seq441 Length=67861 Score = 114 bits (126), Expect = 2e-20 Identities = 302/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCC 175289 ||| | || || || |||||| | ||||| | ||| ||| || || || |||||||| Sbjct 40560 GAGGTAGTTGACTTCCTCAAGAACCCCGAAAAATACAC-GGACGTAGGCGCAAAGATCCC 40618 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 || || | | | | || || || ||||| ||||| || || || |||| | Sbjct 40619 TCGCGGGGTGATCTTGGACGGACCCCCCGGGACGGGTAAGACACTGCTGGCTAAAGCCGT 40678 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 |||||| || || || || |||||| | | | | | | | ||||| |||||||| Sbjct 40679 CGCGGGGGAGTCGGGCGTGCCCTTCATCTCGGCCGCCGGCTCGGAGTTTGTTGAGATGTT 40738 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-- 175467 ||| || ||||||||| | || |||||| | || ||| | ||||| | || Sbjct 40739 TGTGGGGGTGGGTGCCTCGCGTGTGCGCGATATGTTCGAA----CAGGCGAAGAAGAACG 40794 Query 175468 --CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTG 175525 ||||| || | || || || ||||||||||| |||||| || ||| | || | | Sbjct 40795 CGCCATGCATCATTTTTATCGACGAGATTGATGCCGTGGGCCGTCAGCGCGGGGC--GGG 40852 Query 175526 GTATGCC--AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGA 175583 | |||| || || |||||| | || || || | || || || || ||||||||||| Sbjct 40853 CTTTGCCGGAGGGAACGACGAGCGGGAGCAGACCCTGAACCAGCTGCTGACCGAGATGGA 40912 Query 175584 TGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCT 175643 ||||| || | |||| || | || || || ||||| ||||| | || || | Sbjct 40913 CGGCTTCGAGGGCAACCCTGGGATCATCGTCATCGCCGCCACCAATCGTGCAGACGTCTT 40972 Query 175644 TGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | ||| | || |||||||| || || ||||| Sbjct 40973 GGACCAGGCCTTGCTCCGCCCGGGCCGCTTCGATCG 41008 >seq4979 Length=17524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || ||||||||| | | || ||||| |||||||| ||||| |||||||| || Sbjct 10049 TCTTTTGCCGAGCGCTTGATCGCCTTTGCAGCCGTGGAGGGCATCTTTTTCTCCGGCTCC 9990 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCC 65168 |||||| | |||| ||||||||||||||||| || ||||| Sbjct 9989 TTCTGCTCGATTTTCTGGTTGAAGAAGCGGGGCCTGATGCC 9949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596518444156800