Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2348 598 5e-166 >seq2348 Length=90098 Score = 598 bits (662), Expect = 5e-166 Identities = 725/979 (74%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| ||||||||||| || || | ||| ||||| |||||||||||||| | Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | |||| |||| || || | ||| | ||||||||||||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 64387 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| ||||| |||||||| | ||| ||||||||||||| ||| || | || ||||||| Sbjct 64386 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 64327 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 || | || ||||||||| | | ||| | ||||||||| | | | |||||| || Sbjct 64326 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 64267 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||| || ||||||||||| | |||||||| || || ||||| || || || || || Sbjct 64266 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 64207 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTT--CTGAGACTCT-TCTTCAGTTGTCTCT 8247 ||||||||||| ||||| || ||||| ||||| | || || | ||||||||| || Sbjct 64206 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCA 64150 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | ||||| | |||||| || | |||||| ||||| |||||||| | |||||||| ||| Sbjct 64149 CGGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAAC 64090 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| || || || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 64089 ACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAAT 64030 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || ||||||||||| || |||||||| ||||||| |||||| ||||||||||| ||| Sbjct 64029 ACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCT 63970 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 || || | ||| || | |||||| ||||| || |||| ||||||||| | ||| Sbjct 63969 TGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCT 63910 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACT-CCCACTGTCTACCCATGTA 8546 || | ||||| || | ||| ||||| ||||| | ||| | |||| | | |||||||| Sbjct 63909 ACGAAAATCCAAGGACGCATCCCTAAACGGTA-GCTAAGTTCCCATTCACGTCCCATGTA 63851 Query 8547 AGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 || | || |||||| ||||| || | || | || || ||||| ||||| || | Sbjct 63850 GCAAGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 63792 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 ||| || |||| | ||||||||||||| || |||||||| | ||||||||||| | Sbjct 63791 GCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 63732 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 || ||||| || ||||| | ||| ||||||||||| || | | ||| || || || | Sbjct 63731 AACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 63672 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||| ||||| |||||||| || || || || || || || || | ||| ||||| Sbjct 63671 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGC 63612 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | | ||| | ||| || ||| ||||||| ||| || |||||||||| || | | || Sbjct 63611 TTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 63552 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | ||| || || | ||| Sbjct 63551 TTTCTGTGCTAGTGATCCA 63533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615809589799200