Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2348 711 0.0 seq2347 89.7 6e-13 >seq2348 Length=90098 Score = 711 bits (788), Expect = 0.0 Identities = 753/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 ||||| ||||||| ||| | || |||||| | |||||| | || |||||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 165879 ||| | ||||| || || | || |||| || | |||||||||| |||| |||||| Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 165880 GCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTAT 165939 || || || || || || ||||| || ||||||||||| || ||||| || || | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 165940 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTC 165999 || |||||||| ||| | ||||| ||| |||| ||| ||||| |||||| | |||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 166000 TATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAA 166059 || || | |||||||| || || | ||||||||||| || ||||||||||||| |||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 166060 CTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTG 166119 || || || || |||||| | | || | | ||||||||| ||||| |||||||| Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 63874 Query 166120 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCT 166179 |||||| |||| |||||||| ||||| | || |||| |||||| ||||| ||||| Sbjct 63875 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 63934 Query 166180 GCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCA 166239 || |||||||||||| || | || || |||| |||||||| |||||||||| ||||| Sbjct 63935 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 63994 Query 166240 CTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTC 166299 | || ||||| || || ||||||| |||||| || |||||||| || ||||| ||||| Sbjct 63995 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 64054 Query 166300 ATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCT 166359 ||||| || ||||||||| || |||||||| || |||||||| ||| || ||||| Sbjct 64055 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 64114 Query 166360 ATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAA-AC--CGAATCC 166416 ||||| || | | || || ||| | | | | || |||||| || | ||| Sbjct 64115 ATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCT 64171 Query 166417 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 |||||||||||||| || ||||||||||||||||| |||||||||||||| || || Sbjct 64172 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 64231 Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 |||||||| || ||||| |||||||||||||| ||||||||||| || | || ||| Sbjct 64232 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 64291 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 |||||| | ||||| ||||| ||||| || |||||||| || || ||||| | ||| Sbjct 64292 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 64351 Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 |||||||||||| | ||||| |||||||||||||| || | ||||| | || |||||| Sbjct 64352 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 64411 Query 166657 GTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCAT 166716 ||| | ||||| ||||| || || | ||||| |||| | | ||||||||||| ||||| Sbjct 64412 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 64471 Query 166717 GAGCGTAACGCACACAACTTCCCCCTCGA 166745 || |||||||| ||||||||||| || || Sbjct 64472 GAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 565 bits (626), Expect = 3e-156 Identities = 736/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 167024 TCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 167083 ||||||||||| | ||| | |||||||| || ||| |||| ||||| || ||| | | | Sbjct 5089 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 5030 Query 167084 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTT 167143 |||| || || | |||||| |||| || ||| | || || |||||||| || || || Sbjct 5029 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 4970 Query 167144 GGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGG-TGCGAACTTTCTTACTGCGGCA 167202 |||| || |||||| | || || ||| | ||||| ||| ||||| | |||| || Sbjct 4969 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCT 4911 Query 167203 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCT 167262 || || || ||| || |||||||||||| || | | ||||||| || || | Sbjct 4910 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 4851 Query 167263 CAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 ||||| ||||| | ||||| ||| | || ||| | ||| ||||||| || | || Sbjct 4850 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 4791 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCCTGATTGG 167381 || || |||| | ||||| ||| || || ||||| |||||| ||||||| || | || Sbjct 4790 GGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGG 4732 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 ||| ||||| || ||||| ||||| || || || ||||| || || |||||| || || Sbjct 4731 TATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATT 4672 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 | | ||||||| | || ||| || ||||||||||| || || ||||| || || Sbjct 4671 CTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGC 4612 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || ||||||||||| | ||| | ||||| ||||| ||||||||||| |||||||| || Sbjct 4611 TATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 4552 Query 167562 TATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTAC 167621 ||||||||||||||||| || | ||||||||| | | |||||||| ||||| | ||| Sbjct 4551 CATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTAC 4492 Query 167622 AGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTC 167681 ||||| || || || | ||||||||||| || || || || || ||| | Sbjct 4491 TGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACC 4432 Query 167682 TACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTT 167741 || || |||||| |||||||||||||| ||||| ||| |||||||||| || || || Sbjct 4431 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTT 4372 Query 167742 CGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTAT 167801 || ||||||| |||||||| |||||||||||||| |||||||| ||||| || | Sbjct 4371 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 4312 Query 167802 GGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTACG 167860 || | |||||| || |||| || | ||| | || |||| ||| | || || | Sbjct 4311 AGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATG 4253 Query 167861 ATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTA 167920 | || || ||||||||| | | || || || |||||||| ||||||||||||||||||| Sbjct 4252 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 4193 Query 167921 AAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATG 167980 |||| ||| | | || |||||| || || ||||| | || | || ||||| |||| Sbjct 4192 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATG 4133 Query 167981 AGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | || ||||| ||||||||||| ||| | ||||| || ||||| || ||| Sbjct 4132 AAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 4083 >seq2347 Length=4856 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| |||||||||| ||||||| || Sbjct 4629 TCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTGGTTCAAGTC 4688 Query 18189 CTACCTGGGGAGTT 18202 | ||||||||||| Sbjct 4689 CAGCCTGGGGAGTT 4702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561199872984000