Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq802 134 2e-26 seq259 134 2e-26 seq2348 118 1e-21 >seq802 Length=4370 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||| | || || ||| | Sbjct 486 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 427 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||||||||| ||||| |||||||| ||||||||| Sbjct 426 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 367 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| ||||| ||||| || || |||| |||||| Sbjct 366 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 307 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTT-CGGGGTGG 172088 |||| || ||||| || | || |||| ||| |||| || ||||| Sbjct 306 ATTCAGAAAGAGTCAACCTTGCA-CTTGGTCTTGCGCTTGCGTGGTGG 260 >seq259 Length=12200 Score = 134 bits (148), Expect = 2e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 171851 ATACTAGTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGG 171910 |||| || || |||||||||||||| || || || || || || || ||||| ||||| | Sbjct 5566 ATAC-AGCAGGATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACG 5624 Query 171911 TTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTC 171970 | ||| | ||||| ||||| || | || |||||||| || ||||| || || | Sbjct 5625 TGGAGCCCAGTGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCC 5684 Query 171971 CACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCG 172030 | || |||||||| || || |||||||| || || ||||| || || || || || | Sbjct 5685 CCCCTGATCAGCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGT 5744 Query 172031 CTGATTACAACGTTCAAAAGGAGTCTACTCTACA 172064 |||| |||||| |||| || |||||||| ||||| Sbjct 5745 CTGACTACAACATTCAGAAAGAGTCTACCCTACA 5778 >seq2348 Length=90098 Score = 118 bits (130), Expect = 1e-21 Identities = 202/292 (69%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 195696 AAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGG 195755 |||| || | | | || ||| | ||||| || || || || | ||| || ||| |||| | Sbjct 7682 AAACAGTAACAAAAGCTGTTATTACTGTCCCGGCATATTTTAATGACTCTCAAAGACAAG 7623 Query 195756 CGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAA 195815 | ||||| ||||| | | ||||| || || | || | ||||| |||||||||| Sbjct 7622 CAACAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAA 7563 Query 195816 CAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGA 195875 |||| || || |||||||||| | ||||| || | || || ||| | || | Sbjct 7562 CAGCCGCAGCTCTTGCTTATGGGTTAGACAAAAA-----ATCAA-ATGAAACAATTTTAA 7509 Query 195876 TCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATAT 195935 | |||||| | ||||||||||| ||||| || || || | | ||| | |||| ||| Sbjct 7508 TTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGGGGATGGTGTAT 7449 Query 195936 TCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||||| || || || || |||| || |||||||||| ||||| || Sbjct 7448 TTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTTTGA 7397 Score = 86.0 bits (94), Expect = 8e-12 Identities = 197/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 196452 AAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTG 196511 ||||| || | || | || || |||| |||| | || |||||||| |||||| Sbjct 6923 AAGATGTTTTATTATTAGACGTAACACCATTATCTTTAGGAGTTGAAACAATTGGTGGTT 6864 Query 196512 TTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAAC--AAGTCTT 196569 | ||||||| ||| ||||| || || ||||| ||||| | | || ||| || || Sbjct 6863 TAATGACTAGAATGATTGAAAGAAATACAACAATTCCAGCAACAAA--AACTGAAACATT 6806 Query 196570 TTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTC 196629 |||||| || || |||||| || ||||||| ||| |||| ||||||| Sbjct 6805 TTCAACAGCCGAAGACAACCAACCAAAAGTAGATATTCATGTACTACAAGGTGAACGCTT 6746 Query 196630 CCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACC 196689 | ||| |||||| | | ||| |||||| | | ||| ||||||| || Sbjct 6745 ACTTGCTTCAGATAACAAAAGTTTAGGACATTTCGAACTTGGGAATATTTCAGCTGCCCC 6686 Query 196690 CAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTA 196744 ||||| || ||||| ||| | || || |||||||||||| |||||||| || Sbjct 6685 TAGAGGAGTACCACAAATTGAAGTAACATTTGATATAGACGCAGATGGAATTTTA 6631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657805988299200