Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2348 529 5e-146 >seq2348 Length=90098 Score = 529 bits (586), Expect = 5e-146 Identities = 717/991 (72%), Gaps = 10/991 (1%) Strand=Plus/Plus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||||| || || || ||| |||| || | |||||| | || | || |||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCC-GCTACAACTTGTTTTATTATCGCCTTTGT 41343 || || | ||||| || | | | || | ||||||| || || || ||||| || | Sbjct 63575 GGTGTTTTAATGATCCC-TACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCAT 63633 Query 41344 TGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTA 41403 | ||||| || || || |||||||| ||||| ||||| || ||||| || || || || Sbjct 63634 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATA 63693 Query 41404 TGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTT 41463 || |||||||| || |||| || || |||| || ||| || || || | ||||| Sbjct 63694 CGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTT 63753 Query 41464 CTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCA 41523 ||||||| ||||||||||||| | | || |||||||| |||||||| ||||| | ||| Sbjct 63754 CTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCA 63813 Query 41524 ACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTGGGAAC 41582 ||| ||||| |||||| | | || || |||| ||||||||||| || ||||||| Sbjct 63814 ACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAAC 63872 Query 41583 TTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCG 41642 ||||||| || |||||||| | || ||||| || || || | ||| ||||| || || | Sbjct 63873 TTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTG 63932 Query 41643 CTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGC 41702 | || | ||| || ||| | |||| || | ||||| || || ||||||| ||||| Sbjct 63933 CAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGC 63992 Query 41703 CCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTC 41762 | || || || || || || ||||||| |||| | || ||||| || || ||||| |||| Sbjct 63993 CTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTC 64052 Query 41763 TTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTG 41822 ||||||| || || || ||| ||||| || || || |||||||| ||| ||| || Sbjct 64053 TTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTG 64112 Query 41823 CTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGA-GGTTTCA 41881 | ||||| ||| || || || || | || ||||| |||||||| ||| | Sbjct 64113 CAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTAT 64169 Query 41882 CAG--AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTC 41939 | | ||||| |||||||| ||||| ||||| ||||| |||||||| || || ||||| | Sbjct 64170 CTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCAC 64229 Query 41940 ACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTC 41999 |||| || ||||| || | ||||||||||| || || || || || || ||| | | | Sbjct 64230 ACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTAC 64289 Query 42000 ATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA 42059 | ||||| | ||||| ||||| ||||||||||| ||||| |||| ||||| | | Sbjct 64290 ACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCA 64349 Query 42060 CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGAC 42119 | ||||| |||||||| || || |||||||| |||||||| | | | | | || | Sbjct 64350 CAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTC 64409 Query 42120 AGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGC 42179 ||||||||||| |||||||||||| | |||||||| | | || | || || |||| Sbjct 64410 GTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGC 64469 Query 42180 ATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 | || || ||||| ||||||||||| || || Sbjct 64470 ACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202489009440