Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2348 518 9e-143 >seq2348 Length=90098 Score = 518 bits (574), Expect = 9e-143 Identities = 688/954 (72%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 |||||| | || | || ||||| ||||| | ||||| || | | | ||||| Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 42376 ACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAA 42435 | ||| || || |||||||||| || || ||||| ||||| || ||||| || |||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 42436 CCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGC 42495 || || |||| || ||| | || || |||||||| ||| | ||||| || | || || Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 42496 AGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGG 42555 |||||| ||||| | || || || | | |||||||| | | ||||||||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 42556 CTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCT 42615 || ||||| || || ||||| || || || || || |||||| | | ||| | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 42616 TACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTT 42675 ||| ||||||| |||||||||||| ||||| | |||||| | || ||||| || || Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 42676 GCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAA 42735 |||| ||| || || || |||||||| | |||||| ||| | | || ||| | || ||| Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 42736 GGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTC 42795 ||| || || ||||| |||||| | || || || ||||| |||||||||||||| || Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 42796 TTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTA 42855 ||||| || ||||| |||||||||||||| || ||||||||| ||||||||| || || Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 42856 TTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGT 42915 |||||||| || || ||| || ||||||||| |||||| || ||| | | | ||| Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 42916 GAAACGACTGAAAAC---GAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAG 42972 ||| |||||| || | | || || || ||||| || || ||||| || || Sbjct 64151 GAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 42973 ACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCG 43032 ||||| ||||| || || || || |||||||||||||| | ||||||||||| || Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 43033 TTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGG 43092 || || || || |||| |||||||| | || |||||||| ||||| || || ||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 43093 TTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAA 43152 || ||| ||||||| | || || ||||| || ||||| || || || ||||| |||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 43153 TCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCC 43212 ||| ||||||||| || || ||| ||| ||||||||||| ||| | || ||||| Sbjct 64388 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 64447 Query 43213 AACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 | | || | || || |||||||| || || || || |||||||| || ||| Sbjct 64448 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143521107459280