Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2348 484 2e-132 >seq2348 Length=90098 Score = 484 bits (536), Expect = 2e-132 Identities = 715/999 (72%), Gaps = 14/999 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || || || ||||| || || ||||| |||||||| ||||| | || | | | Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 64447 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCA--TTAAC-ATCTACTACT 25993 || ||||| | | |||||||| || || | ||| | | || | ||| || ||| Sbjct 64446 GCACGGTTGATAATGTCAGCCCAAGT--GT-TGATCACACGACCTTGGCTATCAACAACT 64390 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| || || |||| ||| ||||||||||||| || || | || || Sbjct 64389 GATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTT 64330 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || ||||| ||||||| ||| | ||||| || | || ||| ||| || Sbjct 64329 AACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTG 64270 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| || || || || ||||| | |||||||| ||||||||||| || || || || Sbjct 64269 AAACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 64210 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| ||||| || || || || || || || | ||| ||||| Sbjct 64209 GTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCA 64150 Query 26234 -GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 | | ||| || | || || | | || ||||| ||| ||| | || |||||| || Sbjct 64149 CGGATTAAACTAG-ATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAA 64091 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || |||||||||||||||||||||||||||||||| || || || |||||||||||||| Sbjct 64090 CACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAA 64031 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||| ||||| ||||| ||||||||||||||||| | |||||| |||||| || || || Sbjct 64030 TACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACC 63971 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 |||||||| || |||| |||||| ||||| ||||| | || ||| |||| | || Sbjct 63970 TTGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGC 63911 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC-TCCC-TGCA 26530 || || ||||| || | ||| |||| | ||| |||||||| | | |||| || Sbjct 63910 TACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATG-- 63853 Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 || ||||| |||| ||||||||| || | | ||||| || || || || ||||| Sbjct 63852 TAGCAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 63793 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 ||||| ||||| | | |||||||||| | ||||| || || | || || |||||| Sbjct 63792 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 63733 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || || | || || |||| || || ||||||||||| | | || || | ||| Sbjct 63732 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 63673 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACAT 26770 || ||||| || ||||| |||||||| || |||||||||||||| || | || || || Sbjct 63672 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAG 63613 Query 26771 GTAGTGGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACG 26829 | || |||| | ||| | |||| ||||| | || |||||||| || | || | ||| Sbjct 63612 CTTGTAGCTGTTAATAATGTAGGG-ATCATTAAAACACCGAACCAACCGATGTATAAACG 63554 Query 26830 GTTCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868 ||| || || || || | ||| || || | |||||| Sbjct 63553 GTTTTCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 63515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147699967011200