Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2348 659 0.0 >seq2348 Length=90098 Score = 659 bits (730), Expect = 0.0 Identities = 720/954 (75%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || ||||||||||||||||| | ||||||||| | | | ||| Sbjct 63548 GAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCT 63607 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 | | |||||||| |||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 63608 ACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGT 63667 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || ||||| || | | || || |||||||| ||| | ||||| ||| | || Sbjct 63668 GAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCA 63727 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 ||||| ||||| |||||| | |||||||| || |||||||||| || || | || || Sbjct 63728 AGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAA 63787 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||| | ||||| |||||||||| |||||||||||| || |||||| | | || | | Sbjct 63788 TGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT 63847 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| || ||| | ||||||||| |||||| | || |||||||||||||| | Sbjct 63848 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 63907 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 || || | ||| || |||||| |||| || || |||||| | |||| || |||| Sbjct 63908 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 63967 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 |||||| |||||||||| |||||| | ||||||||||||||||| |||| ||||| Sbjct 63968 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 64027 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||||||||||||||| || ||||||||||| ||||| ||| ||| || || ||| Sbjct 64028 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 64087 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 ||||| ||||||||| | ||| ||| ||||| ||||| | || |||||| ||||| Sbjct 64088 GTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATC 64147 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 ||||||||| || | ||| ||||| |||||||| || ||||||||||||||| Sbjct 64148 CGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 ||||| ||||| || ||||| || || ||||| || ||| | |||||||| || ||| Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 |||||||||||| | | | ||||||||| | ||||| ||||| || || | |||||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 ||||||| | || | || |||||||||||| | ||||| |||||||||||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 155833 TCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891 || || || || || | ||| || ||| || ||||| |||||| | ||||| || Sbjct 64388 TCAGTTGTTGATAGCCA-AGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGC 64446 Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGA 155945 || | | |||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 64447 TGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584785050381600