Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2348 578 1e-160 >seq2348 Length=90098 Score = 578 bits (640), Expect = 1e-160 Identities = 739/1013 (73%), Gaps = 4/1013 (0%) Strand=Plus/Minus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | || Sbjct 64506 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAA-TC 64448 Query 40593 TGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTACTG 40650 | | ||| | || ||||||||||| || || ||| || || || || |||| Sbjct 64447 AGCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACC-TTGGCTATCAACAACTG 64389 Query 40651 ACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAA 40710 | ||||| ||||| || || || | ||| || ||||| || || || | | || | Sbjct 64388 ATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTA 64329 Query 40711 GCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGA 40770 ||| || || | ||| || ||||| | | |||||||||| ||||| ||||||| Sbjct 64328 ACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGA 64269 Query 40771 ATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAG 40830 | || ||||| || |||| | ||||||||||||||||||||||||||||| |||| Sbjct 64268 AACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAG 64209 Query 40831 TCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 | || |||| || ||||| || || |||||||| ||| || || || || | Sbjct 64208 TTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCAC 64149 Query 40891 GAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGA 40950 | || | || || ||||| || ||||| ||| || |||| |||||||| | Sbjct 64148 GGATTAAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACA 64089 Query 40951 CGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGA 41010 | || ||||| || |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 64088 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 64029 Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 | |||||||||||||| || ||| ||| ||||||||||||||||||||||| ||| | Sbjct 64028 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 63969 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCA 41130 | |||| ||| |||| ||||||||| || ||||| | | |||||||| | | || | Sbjct 63968 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 63909 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATG 41190 | || ||||| || | ||| |||| | ||| ||||||||| | | || ||| Sbjct 63908 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 63849 Query 41191 CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCC 41250 ||||| |||| ||| ||||| || || | ||||| || || || |||||||| |||| Sbjct 63848 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 63789 Query 41251 ACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 | ||||| | | | |||||||| | ||||||||| || | || || |||||||| | Sbjct 63788 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 63729 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| || || || | ||||| ||||| ||||| | | || || | || || | Sbjct 63728 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 63669 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGG 41430 |||| || ||||| |||||||| || ||||||||||| || ||||| ||||| || | | Sbjct 63668 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 63609 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 |||| |||| ||||| || ||||||| ||||| |||||||| | ||||| ||||| | Sbjct 63608 TAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTT 63549 Query 41491 CGGTGCTAGTGACCCAGTTACAAAACTTCTCCCAGTTGGTAGTAGTGTCTCTT 41543 | |||||||||| ||| || || |||||| | ||||| | |||||| Sbjct 63548 CTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCATAAGCTAGTACTTTCTCTT 63496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143690693643240