Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2348 655 0.0 >seq2348 Length=90098 Score = 655 bits (726), Expect = 0.0 Identities = 709/938 (76%), Gaps = 6/938 (1%) Strand=Plus/Minus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || |||||||||||||| |||||||| |||||||| |||||||| || | | || | | Sbjct 64500 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 64441 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | ||||| |||||||| ||||| || |||| | ||||| || |||||| Sbjct 64440 TTGATAATGTCAGCCCAAGTGTTGATCAC---ACGACCTTGGCTATCAACAACTGATTGG 64384 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 ||||||||||| ||||| | |||||||||||| || | || | ||||| |||||| Sbjct 64383 TTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAG 64324 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || || || | ||||| | ||||||||| | | | ||||||||||||| | Sbjct 64323 ATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTT 64264 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 || || |||||||| || || || ||||| || || ||||| || ||||||||||| ||| Sbjct 64263 GCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCT 64204 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 ||||||||||| || |||||||||||||| || | || |||||| | ||| Sbjct 64203 TCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCACGGATT 64144 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | ||| || ||||||||||| ||||| ||||| || | || ||||| || ||||| Sbjct 64143 AAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCA 64084 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 || || ||| ||||||||||||||||||||| |||||||| ||||||||||| || ||| Sbjct 64083 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 64024 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 ||| |||| ||||||||||| ||||| | |||||| | |||||||| |||||| ||| Sbjct 64023 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 63964 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | || || | ||||| || || |||||||| |||||||| ||| | ||||| | Sbjct 63963 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 63904 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||||||||| || | |||||| ||||||||| | ||| || ||| | Sbjct 63903 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAAGCT 63844 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | | |||||| || |||||||||||| |||| ||||| || || | ||| || Sbjct 63843 ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTCG 63784 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 |||| || || |||||||| | || |||||||||| ||| || ||||| ||||| ||| Sbjct 63783 TCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGGA 63724 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | ||| ||||| | || |||||||| ||||| | || || || || || ||||| | | Sbjct 63723 ATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGG 63664 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| ||| Sbjct 63663 ATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCT 63604 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 | | || ||| ||||| || |||||||||||||| Sbjct 63603 GTTAATAATGTAGGGATCATTAAAACACCGAACCAACC 63566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566898584277600