Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2348 726 0.0 seq2347 93.3 5e-14 >seq2348 Length=90098 Score = 726 bits (804), Expect = 0.0 Identities = 753/981 (77%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || |||||||||||||| |||||||| || ||||| ||||||||||| ||| |||| ||| Sbjct 64500 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 64441 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 |||| || ||| ||||| || | || ||| ||||||| | || |||||| Sbjct 64440 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 64381 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 |||||||| || || | |||||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 64380 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 64321 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 || || || ||||| ||||| | ||||||||| | | ||| ||||||||||| ||| Sbjct 64320 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 64261 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || |||||||| | ||| || ||||| || |||||||| || ||||||||||| |||||| Sbjct 64260 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 64201 Query 68149 TCTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGT-TTCAGTGGTTTCACGAACC 68205 ||||| || || |||||||| ||||| | | || | || |||||| |||||| | Sbjct 64200 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGT---TTCACGGATT 64144 Query 68206 AGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCA 68265 | ||| || || || |||||||||||||||||||| | |||||||||||| || ||| Sbjct 64143 AAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCA 64084 Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 ||||| || ||||||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 64083 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 64024 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCG 68385 ||| |||||||||||||||| || || | |||||| | |||||||| |||||| ||| Sbjct 64023 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 63964 Query 68386 AAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAG 68445 | || || | | ||| ||||| |||||| || || || || ||| | || || | Sbjct 63963 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 63904 Query 68446 ATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAG 68505 |||||||||||||| || | ||| ||| |||||||||||||||||||||||| |||| Sbjct 63903 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCAAGC 63845 Query 68506 -ATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 | ||| | | |||||| || | ||| |||||| |||||||||| ||||| | ||| || Sbjct 63844 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTC 63785 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 || | | || |||||||||| || || ||||||| |||||| || || ||||| || Sbjct 63784 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGG 63725 Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || ||| ||||| | || |||||||| || || | |||||| ||||| || |||||||| Sbjct 63724 AATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 63665 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGC 68744 ||||||||||| || || || || || |||||||| |||| |||||| ||| | || || Sbjct 63664 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 63605 Query 68745 TGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGT 68804 || | | ||||||||||| | || ||||||||||| | ||| | ||||| ||||| Sbjct 63604 TGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTGT 63545 Query 68805 GGAAGTCACCCATTCGCAGAA 68825 | ||| | ||| |||||| Sbjct 63544 GCTAGTGATCCAAGAGCAGAA 63524 Score = 565 bits (626), Expect = 3e-156 Identities = 734/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || || ||||| || | ||| || |||||||||||||| |||||||| ||| Sbjct 4081 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 4140 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || | |||| ||||| | || |||||| || |||| || || || || ||| Sbjct 4141 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 4200 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || ||||| ||||| ||||| | | |||||| |||||||||||||| || Sbjct 4201 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 4260 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 | | ||| | || | ||| | ||||| | ||||||||||| | ||| | || ||| Sbjct 4261 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 4320 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| ||||| |||||||| | ||| | || || ||| |||| |||||| || || Sbjct 4321 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGT 4380 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| | ||| || || |||||||| ||||||||||| ||| || | ||| Sbjct 4381 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 4440 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| || || || ||||||||||| | | || || ||||| ||| | ||| Sbjct 4441 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 4500 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||||| | | ||||||||| | || ||||||||||||||||| || || || Sbjct 4501 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 4560 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||||||||| ||||||| ||| | |||||||| || || |||| || Sbjct 4561 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 4620 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||||| || |||||||| | ||| || | ||| ||||| | || ||| | Sbjct 4621 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 4680 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA 67244 || || || |||||||| || || || ||||| ||||| || ||||| ||||| | ||| Sbjct 4681 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 4740 Query 67245 CGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 || || | |||||| || || || || ||| ||||||| | || ||||| || | || Sbjct 4741 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 4799 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 |||||| |||| | ||| || | ||| | ||| || ||||| || || | ||| || Sbjct 4800 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 4859 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | || | | |||||||||||| || ||||| ||||| ||||| | || Sbjct 4860 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 4919 Query 67424 GAGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | | || | ||| ||||| | ||| ||| || | ||| || |||||||| ||| | Sbjct 4920 TA-AGAAGTTGCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAA 4978 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTA 67542 |||| |||||||| || | ||| ||||||| ||| | | | || || ||||| | | | Sbjct 4979 CAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAA 5038 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | || |||||||| | ||| || || ||||||||||| | ||||||||| Sbjct 5039 GACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATC 5087 >seq2347 Length=4856 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 ||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||||| || | Sbjct 4702 AACTCCCCAGGCTGGACTTGAACCAGCGACCAATCGGTTAACAGCCGATTGCTCTACCAC 4643 Query 35569 TGAGCTACTGAGGATTGAGTT-TTTCTTGTT 35598 |||||||||||||||| | || | |||| || Sbjct 4642 TGAGCTACTGAGGATTTATTTATGTCTTATT 4612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572005346335200