Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2149 161 3e-34 seq1319 100 8e-16 >seq2149 Length=43014 Score = 161 bits (178), Expect = 3e-34 Identities = 606/942 (64%), Gaps = 25/942 (3%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGT-CGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| || || ||||| ||| | | || || |||| || | ||||| ||| Sbjct 34177 GAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCGTGCA 34119 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||| || || ||||||||||| || |||| |||||| ||||| ||| || || || Sbjct 34118 CAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTC 34059 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||| | || ||||| || || |||||||||| ||| | |||||||||| | |||||| Sbjct 34058 CTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAG 33999 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| ||||| |||| ||| |||| |||| | || || |||| Sbjct 33998 CTGCTGGGCCTTAATAACCTTG-----CGTGCTTTCCCACTC--TTCTCGTAGCTGGCGT 33946 Query 155831 -----TCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAA 155883 | | ||| ||||| ||| | || ||| || ||||||| | |||||||| Sbjct 33945 AGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAA 33886 Query 155884 ACAGCGACCAAATTTTATTACCGAT-TACACGCTC--CATAAATACATCACTCGCCCAAA 155940 | || ||||| | || | | ||||| | ||| || | || || ||| | Sbjct 33885 AAAGGGACCA---GTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGA 33829 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 || ||||| || || | ||| | ||| | |||||| ||||| || || || | Sbjct 33828 GGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCA 33769 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 |||||| || || | ||| ||||| || || || || || ||| || | || Sbjct 33768 GGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCT 33709 Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 || || ||||| || || || || || || | ||||| || | |||||||| | | Sbjct 33708 TGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGA 33649 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 | || ||||| ||||| || | ||| ||||| | || | | |||| || || | Sbjct 33648 TGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGA 33589 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || ||||| ||||| | |||| ||||| |||||||| ||| | || | | Sbjct 33588 TGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGT 33529 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 | || || || || || || || | ||| | || || |||| || | ||| || | Sbjct 33528 AGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCC 33469 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 | ||||| || || ||||| |||||||| || ||||| | ||| || ||||| Sbjct 33468 GCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGCGACATGA 33409 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 || ||| |||||| | |||| || ||| |||| || | || | || Sbjct 33408 GATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCA 33349 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | ||| ||||| || ||||| | || || || | || |||||||| | || Sbjct 33348 TGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAGGTACGACTTTT 33289 Query 156478 CCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||| |||||||| || || || ||| | ||| || |||| Sbjct 33288 CCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGT 33247 >seq1319 Length=24917 Score = 100 bits (110), Expect = 8e-16 Identities = 347/538 (64%), Gaps = 5/538 (1%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCG-TCGCTGTATTCTACAATCTCACAGCA 155650 |||||||| || || ||||| ||| | || ||| |||||| || ||||| ||| Sbjct 9014 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCG-TGTATTGGACGATCTCGGTGCA 9072 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||| || || |||||||||||| || |||| ||||| || ||| ||||| || Sbjct 9073 CAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTC 9132 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||||| || || || ||||| ||||| | ||||| || | ||| | Sbjct 9133 CTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAA 9192 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 ||| | ||| | | ||| ||| || ||| || || ||||| | ||| || Sbjct 9193 GTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGTC 9252 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 ||| | ||| |||| || || || || ||||||| |||||| || | || || Sbjct 9253 CCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGGA 9312 Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 ||| | ||| | || | |||||| || | || ||| | ||||||| Sbjct 9313 CCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTCCATAGAA 9372 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 || |||| ||| | |||||| | ||||| |||||||| || || | | ||| Sbjct 9373 GAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAAA 9432 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACC 156067 || || | || |||||||| || || ||||| || ||||||| || || Sbjct 9433 GATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCCCCC 9492 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||| || || || || || || | |||||| | ||||| || | | ||| ||| Sbjct 9493 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG 9550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471688236431820