Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2348 722 0.0 seq2347 82.4 8e-11 >seq2348 Length=90098 Score = 722 bits (800), Expect = 0.0 Identities = 737/955 (77%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||| | || |||||||||||||||| | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | ||||||||| | || |||||||| || || || || || |||||||| ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || || ||||| || || | ||||| |||||||| ||| | ||||| ||| |||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||||||||||| ||| | |||||||| || | |||||||| || ||| | || |||||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG--GTATCTATG 151163 || |||||||||||||||| |||||| || || || |||||| | | | ||| || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 151164 CTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCG 151223 | |||||||| ||||| |||||||| ||||| || || |||||||| ||||| | || Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 | || | ||| |||||||| ||||| || |||||||| ||| | | || || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343 ||||| |||||||||| ||||| | ||||| ||||| || ||||||| |||| | | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTG 151403 | ||||||||||| ||||||||||| |||||||| ||||||||| |||||| ||||||| Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 151404 TCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 151463 | || |||||||| | ||| |||||||| |||||||| || || ||| | | | Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 151464 GTGAGACCACCGAAAAC-GAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAG 151520 |||| || ||| || | || | | ||||| |||||||| || || |||||||||| Sbjct 64149 GTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 64205 Query 151521 AGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTT 151580 | || ||||||||||| || ||||||||||||||||| ||| | |||||||||||||| Sbjct 64206 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 64265 Query 151581 CCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCT 151640 |||||||| || ||| | | ||||||||| | || || ||||| ||||| ||||||| Sbjct 64266 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 64325 Query 151641 GGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 151700 |||| ||||| ||||| | ||||| |||||||||||| | ||||| ||||||||||||| Sbjct 64326 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 64385 Query 151701 AGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTG 151760 | || | | ||| | || || || | ||||| ||||| ||| || | ||||||| Sbjct 64386 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 64445 Query 151761 CAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 151815 | | | | ||||||||||| |||||||| ||||| || |||||||||||||| || Sbjct 64446 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 526 bits (582), Expect = 2e-144 Identities = 725/1009 (72%), Gaps = 4/1009 (0%) Strand=Plus/Minus Query 152371 GATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 152430 ||||||||| | || |||| |||||||| ||| |||||||||| || ||| | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 152431 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 152490 || || || | |||||| |||| || ||| | || || |||||||| | || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 152491 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 152550 || || || || || || ||| || | ||||| ||||| | |||| || || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTGTA 4908 Query 152551 TCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 152610 || || || ||| || |||||||||||| | | | | ||||| || ||||| ||| Sbjct 4907 TCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAA 4848 Query 152611 GGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 152670 || ||||| | ||| |||| | || ||| | ||| ||||||| || | || ||| Sbjct 4847 GGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGG 4788 Query 152671 GCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGTAT 152729 || || | |||| || ||| || || || || |||||| | || ||||| | ||||| Sbjct 4787 GCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 152730 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 152789 ||||| || ||||| ||||| || || || |||||||| || || ||| || || | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 152790 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 152849 ||||| ||| | || ||| | |||||||| || ||||| ||| || || ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 152850 CTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATAT 152909 ||||||||||| | ||| | ||||| ||||| ||||||||| | ||||| || || || Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 152910 GATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 152969 ||||||||| ||||| ||||| || || || | | ||||| |||||||| | ||| || Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 152970 AGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCA- 153028 ||| || || || | |||||||||| || || || ||| |||||| ||| || Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTC-ACACCAA 4430 Query 153029 CTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTG 153088 | ||| |||||| || ||||| ||||| || || ||| | |||||||| || || |||| Sbjct 4429 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTG 4370 Query 153089 GAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGG 153148 | |||||||| || ||||| |||||||||||||| ||| | ||||| || || | | Sbjct 4369 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 4310 Query 153149 GTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATT 153208 || | ||||| |||| |||| || | ||| | || | || | | || || || | Sbjct 4309 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACT 4250 Query 153209 TTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGA 153268 ||||||||||||| | | || | |||||||| |||||||| || |||||||| || | Sbjct 4249 TTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAA 4190 Query 153269 ATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGA 153328 ||||| | || ||||||||| || | | ||| |||| | |||||||| ||||| | Sbjct 4189 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAA 4130 Query 153329 ACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCTGTGATA 153377 | || || ||||| || ||||| || ||||| || ||||| || | ||| Sbjct 4129 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 >seq2347 Length=4856 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 148128 TTACGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTC 148187 ||||||| |||||| || ||||||| ||| | ||||||||||| | | ||| ||||||| Sbjct 773 TTACGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTC 714 Query 148188 AAATCCTGCCACCCCGATTT 148207 |||||||| || ||||| || Sbjct 713 AAATCCTGTCATCCCGACTT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549575269879200