Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2348 609 3e-169 >seq2348 Length=90098 Score = 609 bits (674), Expect = 3e-169 Identities = 744/1002 (74%), Gaps = 20/1002 (2%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || || || | ||| | |||||||| ||||| ||||||||||| | |||| Sbjct 63544 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 63603 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 63604 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 63663 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 63664 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 63723 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 |||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 63724 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 63783 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 72553 ||| ||| | || ||||| ||||||||||| | || | || ||||| |||||| || Sbjct 63784 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 63842 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 63843 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 63902 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | | ||||| | |||||| || ||| |||||||| |||||||||| | | || ||| Sbjct 63903 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 63962 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 |||| || ||| ||||||||||||||||| |||||||||| ||||| |||||||||| Sbjct 63963 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 64022 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 64023 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 64082 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853 | ||| |||| ||||| | | |||||||||||||| ||||| ||||| || || | Sbjct 64083 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTT 64142 Query 72854 TAATCAGAGAGACAACAG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 72910 ||||| | || ||| | ||| | | || |||||||| || || || ||||||| Sbjct 64143 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 64199 Query 72911 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 72970 |||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| | Sbjct 64200 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 64259 Query 72971 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 73030 | ||| ||||||||||| ||| | |||||||||||| | |||| | || || || Sbjct 64260 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 64319 Query 73031 GTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 73090 || | |||||||| | | || || | ||||||||||||||| | ||||||||||||| Sbjct 64320 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 64379 Query 73091 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 73147 |||||||||||||||| ||| || || | | || | ||||| |||| || || Sbjct 64380 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 64436 Query 73148 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 73207 | ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| | Sbjct 64437 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 64496 Query 73208 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 73246 |||| |||| |||| || ||| | |||||||||||| Sbjct 64497 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 64535 Score = 601 bits (666), Expect = 4e-167 Identities = 769/1048 (73%), Gaps = 41/1048 (4%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 |||||| | | ||||| |||||||| |||||||||||||||| || || ||||| ||| Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 |||||| | || || || | || ||| | || || ||||| ||| |||||||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || |||||||||||||| | || || || || | |||||| || || ||| Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 4920 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTT---GG 73600 |||| ||| ||||||||||||| || |||||||||| || |||| || | | || Sbjct 4919 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 4863 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 ||||||||||||||||||||| || || ||| ||||| |||||||| |||||| ||| Sbjct 4862 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 4803 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 73719 || ||||||||||| | |||||| | || || ||| || ||| |||| ||||| ||||| Sbjct 4802 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 4744 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | ||||| || || ||||| || || ||| | || ||||||| | |||||||||||| Sbjct 4743 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 4684 Query 73780 CACGAGCATCT---TTC-TAATATATCCTTTAGGAC-AGCATAGTTGGTTCTTCGCACCT 73834 | | ||| ||| |||| ||||||||||||| |||| ||||||||||| || ||| Sbjct 4683 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 4629 Query 73835 TCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 73894 || || || ||||| || || || | | |||||| |||| |||||||| || Sbjct 4628 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 4569 Query 73895 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 73954 || ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| | Sbjct 4568 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 4509 Query 73955 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 74014 || || ||||| || || ||| | |||||||| | ||| || Sbjct 4508 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 4467 Query 74015 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTAT 74074 ||| ||| | | | || ||| | || ||| || ||||| |||||| |||||| Sbjct 4466 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 4410 Query 74075 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 74134 ||| | || || ||||||||||||||||| || |||||| | || ||||| |||||| Sbjct 4409 TCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAA 4350 Query 74135 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 74194 | | | || ||| | ||||| || || || || | ||| | |||||| ||| | Sbjct 4349 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 4290 Query 74195 GGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGA 74254 ||||| |||||| ||||| | ||| | |||||||| |||||||||||||||||| | | Sbjct 4289 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 4230 Query 74255 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 74313 ||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || ||||| Sbjct 4229 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 4171 Query 74314 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 74373 ||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| || Sbjct 4170 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 4111 Query 74374 AGTCTTGCCACGAGGCAACGCACTATAA 74401 || || ||||| || ||||| || ||| Sbjct 4110 GGTTTTACCACGTGGAAACGCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572824476088800