Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1319 212 8e-49 seq2149 170 2e-36 seq407 113 6e-19 seq1944 109 7e-18 seq4979 104 3e-16 >seq1319 Length=24917 Score = 212 bits (234), Expect = 8e-49 Identities = 370/534 (69%), Gaps = 21/534 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||||||||||||| ||| ||||| | |||||||||||| || |||||| Sbjct 9493 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG-- 9550 Query 1630125 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG 1630182 |||| || || |||||| | |||||||||| ||||| | ||||| | | | | Sbjct 9551 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 9610 Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 ||||| || || |||| |||| || | |||||||| || |||||||||||||| || Sbjct 9611 CCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACCA 9670 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 |||||||||| || | |||| ||| ||| |||||||| || | |||||| |||| Sbjct 9671 ACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACGCGTG 9730 Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAAC-TGCCGCGACATGGCGTCGTA 1630361 || |||| ||| || || || | || | ||||| || || || |||| ||||| Sbjct 9731 CCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGC-TCATGAGCTCGTA 9789 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | | ||| || || ||| || |||| | || | ||| Sbjct 9790 GGTCTCCA--AGGCG-GCGGGCAGATCCTC------------TCCATGGATACCAAGGGC 9834 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 ||||||| ||||||||||| || ||||| || || || | | ||| || ||| Sbjct 9835 CACGCGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTA 9894 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || || |||||| ||| ||| || ||| |||| | ||||||| ||||| |||| Sbjct 9895 GGCTCGTTCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGCTCGTGTCGGAC 9954 Query 1630542 GGCGGCGTCGAGGGCATCGCGGTGCGCGGCGACAAAGGCCACCAACTCGTCCGA 1630595 ||| ||||| |||| || ||| || ||||||| |||| || ||| || || Sbjct 9955 GGCCGCGTCTAGGGTGGGGCCGTGGGCCGCGACAAGCGCCATCACCTCCTCGGA 10008 Score = 136 bits (150), Expect = 5e-26 Identities = 335/509 (66%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 1628098 ACGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGA- 1628156 || || || |||||||| |||| | |||||||| |||||| || | ||| Sbjct 8990 ACAACGAATTTGGGCAGCACCACCGACGCCAGGTTGCAGACCGCCACCTCT-TCCGCGCT 9048 Query 1628157 CGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTG 1628216 || | |||||||||||||||||||| |||| ||| | | || |||| |||||| || Sbjct 9049 CGTGTATTGGACGATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTG 9108 Query 1628217 GTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTG 1628276 |||| | |||||||| |||||||||| ||||||||||||| ||| ||||| ||||| Sbjct 9109 GTTGCTCTTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTG 9168 Query 1628277 CGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACG-ACAGTCCGC---GCGCGGC 1628332 || | | |||||| |||| | | | | ||||| || ||| | | |||| Sbjct 9169 CGAGTCCAAGATGGCAAACCACAAGT----CCTGAGCACGCACTGTCTTCTTGACTCGGC 9224 Query 1628333 CCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGC 1628392 ||| |||||| ||||| ||| || || | Sbjct 9225 CCTCTCGTTCGTATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGAC 9284 Query 1628393 CGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAA 1628452 |||| || ||||| | ||| |||||| | | | | || | | ||| | Sbjct 9285 CGGGGCACTGATCGGGACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGA 9344 Query 1628453 AGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGT 1628512 | ||||| |||| ||| | || ||||| || || ||||| ||||||||| |||| Sbjct 9345 ACAGGTCGGGAATCCATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGT 9404 Query 1628513 GGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGG 1628572 ||||||| ||||| ||| || | ||||| ||||||||||||||||||||| || Sbjct 9405 GGTTCTTCCGCAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGG 9464 Query 1628573 CAAAGGCGCCCTTG-CGCTTGCCGCCGCC 1628600 ||||||| |||| | | |||||| || || Sbjct 9465 CAAAGGC-CCCTGGCCTCTTGCCTCCCCC 9492 >seq2149 Length=43014 Score = 170 bits (188), Expect = 2e-36 Identities = 321/474 (68%), Gaps = 21/474 (4%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||| ||||| || ||||||||||| || |||| |||||| Sbjct 33701 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 33642 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| |||||| | || | ||||| | | || || | ||||| || | Sbjct 33641 GGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATAC 33582 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || || || | ||||| ||| ||||| || ||||| |||||||||||||| Sbjct 33581 GCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCC 33522 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||||| |||||||| || ||| ||||| || ||| ||| || ||| || Sbjct 33521 GTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGT 33462 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||| ||||| || || ||||| || ||||| | | |||||||| | ||| Sbjct 33461 GCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGCGACATGAGATTGTA 33402 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGG---CCGAT 1630418 ||| | ||||||| |||| | || | | | |||| || || Sbjct 33401 GGT------------CTCCAGCGCCGCGTCAATGT------TCTCTTTGTGGATACCAAT 33360 Query 1630419 GGCGACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAG 1630478 || || ||||||| ||||| |||||| ||||| | || || ||| || ||| || Sbjct 33359 TGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAG 33300 Query 1630479 GTAGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTC 1630532 ||| ||| || || | | |||||||||| | | |||| || ||||| Sbjct 33299 GTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGTC 33246 Score = 150 bits (166), Expect = 2e-30 Identities = 314/474 (66%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 1628128 AGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTG 1628187 |||||||| ||| || || |||||||| ||| || |||||| |||||||| ||| Sbjct 34171 AGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCACAGATTG 34112 Query 1628188 GCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGG 1628247 | || | | || |||| |||||||||||| | |||||||| |||||||||| Sbjct 34111 GATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAAC 34052 Query 1628248 AGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGC 1628307 |||||||| |||| ||| ||||| | ||| | | | || || |||||| ||| | Sbjct 34051 AGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGG 33992 Query 1628308 GCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAG 1628367 || | || | || || || | ||| Sbjct 33991 GCCTTAATAACCTTGCGTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAAC 33932 Query 1628368 GCCGCGCCGTAGCAC-TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTC 1628426 || ||||| | ||| || |||||| || |||| || ||||| || |||||||| Sbjct 33931 TCCTCGCCGCA-CACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTC 33873 Query 1628427 GCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTC 1628486 || || || || |||| ||||| || ||||| |||||| || ||||| || || || Sbjct 33872 CCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATC 33813 Query 1628487 GCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTC 1628546 || || || | | ||| |||||||||||||| ||||| || | || | ||||| Sbjct 33812 ACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTC 33753 Query 1628547 GGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| ||||| |||||| ||| |||| |||||||||||||| ||||| Sbjct 33752 TGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCC 33699 Score = 87.8 bits (96), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||| || | ||||||||||||| || || || ||||| |||| ||||||| | | || Sbjct 34386 CGTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGG 34327 Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 1627973 | || || ||||||| |||||||||||| |||||||| ||||| Sbjct 34326 CTTCCTCGACAGGGTAGTAGTTGATGTCGATGACGCGGTTCAGGTT 34281 >seq407 Length=52422 Score = 113 bits (124), Expect = 6e-19 Identities = 131/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATG---CACAAGGTGGTGCCCATG 507694 ||||| ||||| || ||||||| | |||||| |||| ||| ||| | |||| Sbjct 30227 AACCGACAGCCCTCCCTGCACAAGCTCTCCAT---CATGGCCCACCGGGTCAAGGTCATG 30283 Query 507695 CCCGGGCGCACCATGCGATTCAACCTGGCCGTCA-CGGGCACCTACAACGCCGACTTTGA 507753 ||| |||| ||| | || |||||| | ||| || || |||||||||||||||| || Sbjct 30284 CCCTGGCGGACCTTCCGCTTCAACGAGTGCGTGTGCGCGC-CCTACAACGCCGACTTCGA 30342 Query 507754 CGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGG 507806 |||||||||||||||| ||||| |||||||| | ||| |||||| || |||| Sbjct 30343 CGGCGACGAGATGAACATGCACCTGCCCCAGACGGAGGAGGCGCGGGCGGAGG 30395 >seq1944 Length=8059 Score = 109 bits (120), Expect = 7e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| ||||||| || || |||||||||||||| | | || Sbjct 3211 GCTTGGCCAGCTCACCGGGCAGCGTCAGGCGGACAGCCGTCTGGATCTCGCGGGAGGAGA 3152 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||| | | | ||||| ||| ||||| ||| ||| |||||||| | Sbjct 3151 GGGTGGACTTCTTGGTGTAACGAGCCAGCTTGCCAGCCTCCGTGGCGAGGCGGTCGAAAA 3092 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||| || || ||||||| || || | | || |||||||| || |||||| Sbjct 3091 TGTCACCGATGAAGGAGTTCAGGATGGAAACACCACGC-TTGGAGATACCAGTGTCGGGA 3033 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||||||| Sbjct 3032 TGCACCTGCTTGAGCACCTTGTAGATG 3006 >seq4979 Length=17524 Score = 104 bits (114), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 869222 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATG 869281 ||||| ||||| |||||||| | ||| || || | |||||| ||| |||||||||||| Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008 Query 869282 CCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG 869341 ||||| ||||| |||||| |||| | ||||||||||| | || | | | | || | Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAA--AGACGCGTACTTGC-GGTCG 10065 Query 869342 ATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGA 869401 |||| | |||||| ||||| | || | || || || || |||||| Sbjct 10066 CACCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTT 10125 Query 869402 AAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||| | || || |||| |||| ||||| || ||||| || ||||| ||||| Sbjct 10126 AAGAGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATA 10181 Score = 100 bits (110), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 869713 GGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGAT 869772 ||||| |||||| ||| |||||||| ||||||||| || || |||||||| || Sbjct 10433 GGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTGTGAGAC 10492 Query 869773 AAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCAC 869832 |||||| || |||| ||| | | | |||||| ||||| | |||||| | Sbjct 10493 AAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTGTCGTGGGCGAGGTCGAG 10552 Query 869833 CTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 ||| ||||| ||||||| ||||||||||| | ||||||||| ||||| Sbjct 10553 CTCTTCGGCCGTCCAGAAGGAGGCCTCGGCTTGTTTGTACATATCCCA 10600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106576236274620