Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq259 136 4e-27 seq802 111 1e-19 seq6464 87.8 2e-12 seq2149 87.8 2e-12 >seq259 Length=12200 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| |||| ||||| || || || || || |||||||| || || ||| Sbjct 5575 GATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAG 5634 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| || ||||| || || || || || ||||| Sbjct 5635 TGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCA 5694 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | || ||||| ||||| ||||||||||| | | | |||| || || || Sbjct 5695 GCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAA 5754 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || ||||| ||||| |||||||||| || || Sbjct 5755 CATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 5802 >seq802 Length=4370 Score = 111 bits (122), Expect = 1e-19 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || | || || || || Sbjct 489 ACCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCC 430 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | |||| || || |||||||| |||||||| || || || || |||||| Sbjct 429 AGCGATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGAT 370 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGAT 24877 || || || | || || || || || |||||||| || || || || |||| || Sbjct 369 CAGCAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGA--CG-GACGCACGCTGTCTGAC 313 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||| || || || || | |||||||| ||||| ||||| || || || Sbjct 312 TACAACATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGGGGG 257 >seq6464 Length=44462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || || || ||||| | || || || ||| | Sbjct 38587 ATGCAAATTTTCGTTAAGACCCTGACGGGCAAGACCATTACTTTGGACGTGGAGCCCAGC 38528 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || ||||| Sbjct 38527 GACACCATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAG 38468 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | || |||||||| || ||||| |||||| Sbjct 38467 CAGCGCCTCATTTTTGCCGGCAAGCAGCTCGAGGAT 38432 >seq2149 Length=43014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 903/1442 (63%), Gaps = 52/1442 (4%) Strand=Plus/Minus Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 ||||| || ||||| || ||||| ||| ||||| ||||||||||||| || ||| Sbjct 34756 AATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAACAGACTCG 34697 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 ||||| ||||| ||||| || || | ||||| |||||| || | ||| || || || Sbjct 34696 TTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAGTGAGTTG 34637 Query 138634 CGTAAACCGTGAAGCTTGA-TTCGTTCCTTGAGCGACGACCAGTCCCA-CAAATCGCTAG 138691 || | |||||| || | || | | | | | | ||||||||| | | | | | Sbjct 34636 CGGACACCGTGCTCCTGCACTTTGAAGCGTAAAC-CGGCCCAGTCCCAGCGAGTTG-AGG 34579 Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACT--TGCGGGACTGCCTTCGTA 138749 | | | |||||| ||| | || || | ||| || || |||| ||| || | Sbjct 34578 GGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTTGCTCATGGGGGA--GCCGGCGAA 34521 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTA 138809 | ||||| ||| || ||| | ||| | |||||| | ||| || |||| Sbjct 34520 GGTCTCGTAGGGACCCTCCTTCATCGCGATCTCCATCGACGCCTCTACCGCCCCGAAGTA 34461 Query 138810 AATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG 138869 || || ||| ||| | || || ||| ||||||| | |||| | || | || Sbjct 34460 CATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTCCGGAGACTCGAATGGGAATCG 34401 Query 138870 GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAG 138929 | | | |||| ||||| |||| || |||||||| | |||| ||||| || |||| Sbjct 34400 CATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCAT 34341 Query 138930 ATTTGA-CGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 || || ||| | || | |||| ||| || ||||| | ||||||| ||| | | Sbjct 34340 GTTCGAGCGC-CTGGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGACGCGGTTCAGGT 34282 Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGT 139048 |||| |||||||| || | | | | || | | ||||| ||| | || Sbjct 34281 TTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGTCGTAAGTGGGCGTCTTCC 34222 Query 139049 CGTCGACGACGTCGACAAATTTGTTGA---CACAAA---TC---GAGGCTATGTTGCACA 139099 || || | | | || | ||| | ||| || ||||| | |||||| | Sbjct 34221 CGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTTCACGGAGGCCAGGTTGCAGA 34162 Query 139100 CCGCCACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 |||| || || ||||| | || |||| |||| || || | |||| ||| | ||| Sbjct 34161 CCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCGTGCACAGATTGGATGATTTG 34103 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || || || || || || ||| |||| || || || ||| | ||||| || Sbjct 34102 ATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAA 34043 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCC--CTAGCTTGTA 139276 || ||||| || ||||| || | || | ||| |||| || | || | || Sbjct 34042 GGCGTGCCTGTCTCCACCTGGGAGTCCAGAAT---CGCGAACCAGAGCTGCTGGGCCTTA 33986 Query 139277 TTTGACGCACGTAAAGTTCGTCGC-GCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 | | ||| | | | | |||||| | ||||||| | || || || Sbjct 33985 ATAACCTTGCGTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCG 33926 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 ||| | |||| | || | | |||| || || || | || ||||| | ||| || Sbjct 33925 CCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCG-TC 33867 Query 139396 GC-CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC 139454 || || ||||||| ||||||||| || || |||| | ||| | | || ||| || || Sbjct 33866 GCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGC 33807 Query 139455 CTTCT-TATCTTCCGAACCCATG----TTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || | || || || || ||||| || || ||||| ||||| | ||| Sbjct 33806 ACGCTCCAACT--CGTTGCCGTGGTTCTTACG---CAGGTCCAGGAATTCAAAGATGTCT 33752 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566 || ||||| || || || |||||||| | | || || || ||| || || || ||| Sbjct 33751 GCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCG 33692 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626 |||| || | | || ||||| ||||| | ||| || | | ||| | | || ||| Sbjct 33691 ACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCG 33632 Query 139627 TTGGTGCTACGGATG--GGACTGTTGCGAGCTCGGACGTCATGTACATTGAT--GCCGAT 139682 || | | ||| ||| ||| || || || || | || ||| || ||| ||| || Sbjct 33631 TTCGATCCACGAATGTAGGA--GTCTCGCGCCCGAATGT--TGTGGATGGATACGCCAAT 33576 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTA 139741 || || |||||||||| || | ||| || || | | || ||||| || || | Sbjct 33575 CCCACCCGCAAATTTGGAAATGGCAGCGC-ATTGCTTGAGGGTGTCGTAGATGCCGTCGA 33517 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 || ||| |||| ||| || | || ||||| || || ||||| || | ||||||| Sbjct 33516 TGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGG 33457 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | || || ||||| | || |||||||| | || |||||| | | ||| || | Sbjct 33456 CATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCT 33397 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 | | || |||| | | | ||||||||| | | || ||||| | ||| || | Sbjct 33396 CCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCATGATCATGTGCT 33337 Query 139922 GG 139923 || Sbjct 33336 GG 33335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449859021280800