Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq259 95.1 1e-14 seq802 86.0 5e-12 >seq259 Length=12200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || ||||| ||||| || |||| |||||| Sbjct 5576 ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAGT 5635 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||||||| ||||| || || | ||| ||||| Sbjct 5636 GACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 5695 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| |||||| || ||||||||||| | | || || | || |||||| Sbjct 5696 CAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAAC 5755 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| Sbjct 5756 ATTCAGAAAGAGTCTAC 5772 >seq802 Length=4370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| || | || ||||| | Sbjct 486 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 427 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || || |||||| ||||| || ||| | ||| ||||| Sbjct 426 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 367 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| || || || |||||||| || | | || || | || |||||| Sbjct 366 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 307 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||| || || |||||| |||| || Sbjct 306 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTT 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412807083861980