Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1319 185 1e-40 seq1944 161 2e-33 seq2149 159 5e-33 seq4979 131 3e-24 seq407 111 2e-18 seq1568 98.7 2e-14 seq225 96.9 5e-14 seq658 89.7 8e-12 >seq1319 Length=24917 Score = 185 bits (204), Expect = 1e-40 Identities = 304/439 (69%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 2071576 TGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTG 2071635 ||||||| |||||||||||| |||| ||| | ||||||||| |||||| |||||||| Sbjct 9056 TGGACGATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTC 9115 Query 2071636 GTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTG 2071695 |||||||| |||||||||| |||||||||||||| |||||||| ||||||| Sbjct 9116 TTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCC 9175 Query 2071696 ACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNN 2071755 | |||||| |||| | | | || |||| | || | | ||||||| Sbjct 9176 AAGATGGCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCG 9235 Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815 | ||| | ||||| ||||||||| || || ||||| || | Sbjct 9236 TATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGG-GCACTG 9294 Query 2071816 GACGGG-CAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 |||| || | ||| |||||| | | | |||| | ||| ||||||||| Sbjct 9295 ATCGGGACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGG 9354 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 |||| || || || |||||||| || ||||| ||||||||| ||||||||||| Sbjct 9355 AATCCATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCG 9414 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 |||||| ||| || | || ||| ||||||||||||||||||||| ||||||||| || Sbjct 9415 CAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC-CC 9473 Query 2071995 CTTG-CGCTTGCCGCCGCC 2072012 || | | |||||| || || Sbjct 9474 CTGGCCTCTTGCCTCCCCC 9492 Score = 152 bits (168), Expect = 8e-31 Identities = 191/260 (73%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || |||||||||||| ||| ||||| | |||||||||||| || |||||| Sbjct 9493 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG-- 9550 Query 2073600 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 |||| || || |||||| | ||||||||| ||||| | ||||| | | | | Sbjct 9551 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 9610 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||| || || ||||||||| || | ||||||| |||||||| |||||||| || Sbjct 9611 CCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACCA 9670 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 |||||||||| || | |||| ||| || |||||||| || | |||||| |||| Sbjct 9671 ACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACGCGTG 9730 Query 2073778 CCGGCATTGAAGAGCGTGGG 2073797 || || | ||| || || || Sbjct 9731 CCCGCGTGGAAAAGAGTAGG 9750 >seq1944 Length=8059 Score = 161 bits (178), Expect = 2e-33 Identities = 183/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3250 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 3191 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 ||||||| || || |||||||||||||||| | || | || ||| || ||| Sbjct 3190 GCGTCAGGCGGACAGCCGTCTGGATCTCGCGGGAGGAGA---GGGTGGACTTCTTGGTGT 3134 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || ||||| ||| ||||| ||| ||| |||||||| ||||| || || |||| Sbjct 3133 AACGAGCCAGCTTGCCAGCCTCCGTGGCGAGGCGGTCGAAAATGTCACCGATGAAGGAGT 3074 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| ||| || | |||||||| || |||||| ||||||||||||||||||| Sbjct 3073 TCAGGATGGAAACACCACGCTTGGAGATACCAGTGTCGGGATGCACCTGCTTGAGCACCT 3014 Query 1485707 TGTA 1485710 |||| Sbjct 3013 TGTA 3010 >seq2149 Length=43014 Score = 159 bits (176), Expect = 5e-33 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 |||||| || |||| |||||||| || |||||||| ||| | || ||||||| || Sbjct 33911 CAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCG 33852 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||||||| |||||| ||| |||| || ||||| || || || | | ||| || Sbjct 33851 CATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTT 33792 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| |||||| || | || | || ||| || ||||| ||||| ||||| Sbjct 33791 GCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTA 33732 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||| |||| |||||||||||||| ||||| Sbjct 33731 GATGGCGAAGGAACCCTTGCGCTTGCCTCCGCC 33699 Score = 140 bits (154), Expect = 5e-27 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| ||||| ||||| || ||||||||||| || || | |||||| Sbjct 33701 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 33642 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||| | || | ||||| | | || || | ||||| || | Sbjct 33641 GGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATAC 33582 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || || || ||||| ||| ||||| | || || || ||||||||||| Sbjct 33581 GCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCC 33522 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||||| |||||||| || || ||||| || ||| ||| || |||| || Sbjct 33521 GTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGT 33462 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||||||||||| || || ||||| || Sbjct 33461 GCCGGCATTGAAAAGTGTAGGCGTAGC 33435 Score = 100 bits (110), Expect = 5e-15 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||| |||| ||||||||||||| || || || ||||| |||| ||||||| || Sbjct 34390 AAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGC 34331 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 2070242 | ||| || || ||||||| |||||||||||| |||||||| ||||| Sbjct 34330 CTGGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGACGCGGTTCAGGTT 34281 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 ||||||| ||| || || ||| |||||||| |||| || | ||||||||| |||| Sbjct 34147 GGCGACGTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTC 34088 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 |||||||| |||||||| |||||||||| ||||||||| |||| || ||||| Sbjct 34087 TGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCC 34028 Query 2071684 ATCTG 2071688 | ||| Sbjct 34027 ACCTG 34023 >seq4979 Length=17524 Score = 131 bits (144), Expect = 3e-24 Identities = 201/286 (70%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 794383 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATG 794442 ||||| ||||| |||||||| | ||| || || | ||||| ||| |||||||||||| Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008 Query 794443 CCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGT 794500 ||||| ||||| |||||| ||| | ||||||||||||| | || ||| || Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAG-----ACGCGTACTTGCGGT 10063 Query 794501 TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGC 794560 | |||| | |||||| ||||| | || | || || || || |||||| Sbjct 10064 CGCACCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGT 10123 Query 794561 GAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGG 794620 ||||| | || |||||| |||| ||||| ||| ||||| || ||||| || || Sbjct 10124 TTAAGAGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATACA 10183 Query 794621 TCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| ||| || |||||||||||||| ||||| || || ||||| Sbjct 10184 CCTCACTGTGAATATTTTCGATGGCGATTTGGAAACCGTAGAAGCA 10229 Score = 131 bits (144), Expect = 3e-24 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||||| ||||| ||| |||||||| ||||||||| |||||||||||||| || Sbjct 10433 GGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTGTGAGAC 10492 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGAC 796304 ||||||||| |||| ||| | | | |||||| | ||||| | ||||||||| Sbjct 10493 AAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTGTCGTGGGCGAGGTCGAG 10552 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 ||| ||||| ||||| |||||||||||||| | ||||||||| ||||| ||| || Sbjct 10553 CTCTTCGGCCGTCCAGAAGGAGGCCTCGGCTTGTTTGTACATATCCCAGATCTGT 10607 >seq407 Length=52422 Score = 111 bits (122), Expect = 2e-18 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 429567 AACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCC 429626 ||||| ||||| || || |||| | || || | |||| ||| | ||||||| Sbjct 30227 AACCGACAGCCCTCCCTGCACAAGCTCTCCATCATGGCCCACCGGGTCAAGGTCATGCCC 30286 Query 429627 GGTCGCACCTTCCGGCTCAACCTGGCCGTGA-CGGGCACCTACAACGCCGACTTTGACGG 429685 | || |||||||| ||||| | |||| || || |||||||||||||||| ||||| Sbjct 30287 TGGCGGACCTTCCGCTTCAACGAGTGCGTGTGCGCGC-CCTACAACGCCGACTTCGACGG 30345 Query 429686 CGACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACAC 429745 ||||||||||||| ||||| |||||||| ||||| ||| || | || || || |||| | Sbjct 30346 CGACGAGATGAACATGCACCTGCCCCAGACGGAGGAGGCGCG-GGCGGAGGCGGCCACCC 30404 Query 429746 -CATGGGCGTGGCC 429758 ||||||||| || Sbjct 30405 TGATGGGCGTGACC 30418 >seq1568 Length=31155 Score = 98.7 bits (108), Expect = 2e-14 Identities = 187/273 (68%), Gaps = 12/273 (4%) Strand=Plus/Plus Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 || ||||| ||||| || ||| |||| || ||| |||| || | |||||||||||| Sbjct 14630 GGCTGGACGGTCGAACGGCACATGCGGGACGACGATGTCGTGCTCTTTAACCGGCAGCCG 14689 Query 429579 TCGCTCCACATGGGGTCGAT----GCTCAACCA--CAAGGTGGTGCCCATGCCCGGTCGC 429632 || | |||| |||||| | ||| | ||||||| || | | |||| | Sbjct 14690 TCCTTGCACAAAATGTCGATCATGGGTCACCGCGTCAAGGTGCTG-----GACTGGTC-C 14743 Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || || || | ||||| |||||||||| || || ||||| |||||| Sbjct 14744 ACCTTCCGCCTGAATTTGTCTGTGACCACACCCTACAACGCGGATTTCGACGGGGACGAG 14803 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGC 429752 ||||| ||||| |||||||| || | || || || |||| | || | |||| Sbjct 14804 ATGAATTTGCACTTGCCCCAGACGTTAAACGCGCGGGCAGAAGCGGAACAAATCATGATG 14863 Query 429753 GTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAAC 429785 ||| | | ||| ||| || ||||| |||||| Sbjct 14864 GTGCCTCGCAACATCGTTTCTCCGCAAGCCAAC 14896 >seq225 Length=83981 Score = 96.9 bits (106), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1761309 GTTCTACCTCTACACGCGCAGGGGTCCCTCGTCCGAGTCGCTCCACCTCGGCCACATGAT 1761368 ||| ||||| |||||| | | || || || |||||| || |||||||| ||| | || Sbjct 14965 GTTTTACCTGTACACGGGGCGCGGCCCTTCCTCCGAGAGCCTGCACCTCGGGCACCTCAT 15024 Query 1761369 TCCGTTTCTCTTTTGCCGCTACCTCCAGGAGGCCTTTGGCGTGCCTTTGGTCGTACAGAT 1761428 || || | ||| |||||||||||||||||| || | ||| ||||| ||| | ||| | Sbjct 15025 CCCCTTCCACTTCACCCGCTACCTCCAGGAGGCTTTCGACGTCCCTTTAGTCATTCAGTT 15084 Query 1761429 GGCCGACGACGCCAAGTTTCTGTACAAG 1761456 | | || |||| ||||||| || |||| Sbjct 15085 GACAGATGACGAGAAGTTTCAGTTCAAG 15112 >seq658 Length=35004 Score = 89.7 bits (98), Expect = 8e-12 Identities = 169/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| ||||| || || || |||||||||||| | |||||||| || | | Sbjct 33048 TATTTGGTGACAGCCTTCGTTCCTTCAGAGACGGCGTGCTTCGCCAGTTCACCAGGAAGA 32989 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG--- 1485588 | ||||| || || ||||||||||| ||| | || | | || ||| |||||| Sbjct 32988 GTAAGGCGTACTGCCGTCTGGATCTCCCGG--GAAGAAAG-GGTGGACTTCTTAGTGTAT 32932 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || ||||||||| || | | ||||||| ||||| || || || || Sbjct 32931 CGGGCAAGTTTGCCGGCCTCCGTTGCCAGACGGTCGAAAATGTCTCCGATGAAAGAATTG 32872 Query 1485649 ATGATCGACA-TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 | ||||| | | | | |||||||| || ||| || || || ||||| | |||||| Sbjct 32871 AGAATCGAAACGCCACGT-TTGGAGATACCAGTGTCAGGATGTACTTGCTTCAACACCTT 32813 Query 1485708 GTA 1485710 ||| Sbjct 32812 GTA 32810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915516670511540