Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2348 710 0.0 >seq2348 Length=90098 Score = 710 bits (786), Expect = 0.0 Identities = 750/982 (76%), Gaps = 8/982 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| ||| | ||| ||| | |||||||| || | |||||||||||||| | Sbjct 63524 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 63583 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || ||||| | |||| || | ||||||||| | || ||| | ||||||||| Sbjct 63584 ATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 63643 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || |||||||| ||||| || |||||||| ||||| || || | || || |||||| Sbjct 63644 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 63703 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||| | ||||| ||| |||| ||| ||||| || ||| ||||||||||||| | Sbjct 63704 ATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 63763 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| || || | || || |||||||||||||||||||||| |||||| ||||| Sbjct 63764 TGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 63823 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 || |||||| | | || | | ||| ||||||||||| ||||||||| |||||| Sbjct 63824 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGT 63883 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||| ||||| || ||||| | || || | ||| || ||||| ||||| || |||||| Sbjct 63884 TTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCA 63943 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| | | || || |||| |||||| ||||| |||| ||||||| | |||||| Sbjct 63944 GTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATC 64003 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| ||| | || ||||| ||||| ||||| ||||||||||| || Sbjct 64004 TCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCA 64063 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 ||||| ||| || |||||||| || || ||||||||||| ||| ||| ||||| || Sbjct 64064 TTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGT 64123 Query 157651 AGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTGAA-ACAGAGTCACAG--AACTA 157706 ||| || || | || | || | ||||| ||||||| || | || | | ||||| Sbjct 64124 TCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTA 64179 Query 157707 TGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTT 157766 |||||||| || || ||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 64180 CGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTT 64239 Query 157767 CGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCT 157826 || || | |||||||||||||| ||||||||| | | | ||||||||| | Sbjct 64240 TGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTT 64299 Query 157827 CGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 157886 || || ||||| ||||| || |||||||| ||||| || || | ||||| |||||||| Sbjct 64300 AGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATT 64359 Query 157887 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 157946 |||| | ||||| |||||||||||||| || | ||||| | || ||||||||| | || Sbjct 64360 CAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAA 64419 Query 157947 CACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158006 ||| ||||| || | | ||||| |||| | | ||||||||||| ||||| || ||||| Sbjct 64420 CACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAA 64479 Query 158007 CGCACACAACTTCCCACTGGAT 158028 ||| ||||||||||| || ||| Sbjct 64480 CGCGCACAACTTCCCTCTAGAT 64501 Score = 489 bits (542), Expect = 2e-133 Identities = 719/1012 (71%), Gaps = 4/1012 (0%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 ||| | | | || || || | |||||| |||| || ||| | || || || ||||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | ||| ||||| ||||||||| | ||| |||| || | ||||| ||||| ||| | Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTT 4921 Query 158954 TACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 159013 || | ||| || || || || || || |||||||||||| | | | | ||||| Sbjct 4920 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 4861 Query 159014 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 159073 || ||||| ||||| ||||| | ||| | ||| | || ||| | |||| |||||| Sbjct 4860 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 4801 Query 159074 GGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCAGTTTGAACTGGCAC 159132 || | || || || |||| ||||||| ||| || || || || |||||| | || | Sbjct 4800 CGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTC 4742 Query 159133 GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159192 |||| | ||||| ||||| || ||||| ||||| || || || ||||| || || || | Sbjct 4741 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 4682 Query 159193 TCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159252 | || ||| | ||||| || | || || | |||||||| || ||||| |||| Sbjct 4681 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 4622 Query 159253 GGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAA 159312 | || || || || ||| | |||||| | ||| ||||||| ||||| || |||||||| | Sbjct 4621 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 4562 Query 159313 ACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTC 159372 | || ||||| |||||||| || || || || ||||||| ||||| ||||||| |||| Sbjct 4561 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 4502 Query 159373 ATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 159432 |||| | || || ||||| ||||||| ||| ||||| || || || || || | Sbjct 4501 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 4442 Query 159433 CGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 159492 | || |||| ||| || || |||||||| ||||| || || ||| | ||||||| Sbjct 4441 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 4382 Query 159493 CGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTG 159552 | || || || || |||| ||||||||||| || |||||||||||||| ||||| |||| Sbjct 4381 CACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 4322 Query 159553 TGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 159612 | || || | ||| |||||||| | |||| || | ||| | || | || | Sbjct 4321 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 4262 Query 159613 GTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGT 159672 | || || || || || ||||||| | | ||||| |||||||||||||||||||| | Sbjct 4261 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 4202 Query 159673 TCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATC 159732 |||| || || || || | | || ||||| | | | ||| |||| | || | Sbjct 4201 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 4142 Query 159733 AACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||| |||||||| || | |||||||| || ||| ||||| | || ||||| Sbjct 4141 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 4090 Score = 120 bits (132), Expect = 3e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 158199 TTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATA 158258 |||| | ||||| || ||| |||||||| |||| || ||||||||| ||| |||| | Sbjct 24022 TTATTGATTGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGA-A 23964 Query 158259 TTAACT-ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGA 158317 || || | |||||| | ||||| |||| || | |||||||| | ||| ||| Sbjct 23963 CTACCTTATTCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGT 23904 Query 158318 ACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTT 158377 || ||||||| || |||||||| |||| || |||||| | |||| |||||| || Sbjct 23903 ACAATTGATCAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTA 23844 Query 158378 CTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAAC 158437 | || ||||| || ||||| ||||||||||| || | || ||||||| || | Sbjct 23843 TTAACTTGTGTTGCTTATCCCGCATCTGATTGTCAAATTTTAACAAATCAAGAAGATGAG 23784 Query 158438 CTTTA 158442 ||||| Sbjct 23783 CTTTA 23779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545226842788800