Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2149 302 4e-77 seq1319 286 3e-72 seq259 159 3e-34 seq6464 152 5e-32 seq802 136 4e-27 >seq2149 Length=43014 Score = 302 bits (334), Expect = 4e-77 Identities = 1190/1853 (64%), Gaps = 73/1853 (4%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || ||||||||||| |||||||| ||| | ||| | ||| ||||| || Sbjct 35077 GTCCGTAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAG 35018 Query 148011 GACATGAGC-GTGTA--CGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| ||| | |||||| | | || | | ||| | ||||| ||| Sbjct 35017 G---TGAGCTGTGCAGGCGTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAG 34961 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 ||| | ||||| ||||| |||||| || || | | ||| | |||||||| | Sbjct 34960 ATGTAGGCGCCGCGGTCGGCGGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACACT 34901 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||||| ||||| | || |||| | | | ||| || ||||| | | Sbjct 34900 GTCTTGTACAGGTCCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCTG 34841 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | | | ||| ||||| || | ||| || | ||| | ||||| ||||| | Sbjct 34840 TTGCCCATAATTTGATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGG 34781 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 | ||| |||| ||||||||| || ||||| || | |||||| || |||| ||| Sbjct 34780 AGCAGGTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTC 34721 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || || || |||| |||||||||||||||| |||||||| || | ||| || ||| Sbjct 34720 GATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGC 34661 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC-GCTTCAGAGC 148426 ||| || | || || |||||||| | |||| | | | | |||| || | | | | Sbjct 34660 ATGGGTGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAA-ACC 34602 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||||||||||| | | || || |||||| |||||||||| | || | | ||| Sbjct 34601 GGCCCAGTCCCAGCGAGTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTT 34542 Query 148487 GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCT 148546 ||| |||| ||| || | | ||| || || | | | ||| | || || | Sbjct 34541 GCTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCG 34483 Query 148547 -CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCG 148602 |||||| | ||| ||| |||| || |||||| ||| | | |||| ||| || ||| Sbjct 34482 ACGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCT 34423 Query 148603 CCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661 ||| | | ||| | || | |||| | | || ||||| || | ||||| ||| Sbjct 34422 CCGGAGAC----TCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACG 34367 Query 148662 CCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGG 148721 || | || ||||| |||||| ||||| ||| | | || ||||| || |||| | Sbjct 34366 CCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAG 34307 Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAAT 148781 ||| |||||||| || || || || ||||||||| || ||| |||| Sbjct 34306 TTGATGTCGATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGC 34247 Query 148782 TCAAAATCGTACTTG----TCATC----TAC--GATGCATC-----GGTTCACGGCGATA 148826 | | ||||| || || || ||| || | || || | | ||| | Sbjct 34246 TGCAGGTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAA 34187 Query 148827 ---------GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877 ||||| || ||||| || || |||||| || | ||||||| | |||| Sbjct 34186 AGGTTCACGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATC 34127 Query 148878 TCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTG 148937 || | |||||||||| ||||||| ||||| ||||| || || || |||| Sbjct 34126 TCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTG 34067 Query 148938 CACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---G 148994 || ||||||||| |||||||||| || ||| || |||||||| | |||| || | Sbjct 34066 CAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCG 34007 Query 148995 AACC---GATGCAGGTCCTGCGCGCGCACTTGC-TGCTCGTAGCGACCCTCCTGCTCGTA 149050 |||| | ||| || ||| | |||| |||| | | || || || |||| Sbjct 34006 AACCAGAGCTGCTGGGCCTTAATAACC--TTGCGTGCT--TTCCCACTCTTCT---CGTA 33954 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | || ||| | | ||| |||||||| | || | || || ||||||| || Sbjct 33953 GCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTT 33894 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 ||||| | || ||||| | ||||| | ||||||| ||| ||||| |||||| Sbjct 33893 GGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGT 33834 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCT-----TCGGCGCCCATGTTGCGG 149225 |||||| ||||| | || || || |||| || ||| ||| ||| Sbjct 33833 CCAGAGGGCGTAGAACAGATCACG-----TGCACGCTCCAACTCGTTGCCGTGGTTCTTA 33779 Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285 ||||||| || | || ||||| || ||||| ||||| | ||| | |||| | Sbjct 33778 CGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAA 33719 Query 149286 CCCTTGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACC 149342 |||||||||||||| |||||||||||||| ||| || | | ||| || || || | | Sbjct 33718 CCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGC 33659 Query 149343 ATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGC 149402 |||||| | ||||| ||| |||||||| | | |||| | | ||||| || Sbjct 33658 ATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGA 33599 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCG 149462 | ||||| | | ||||| || || || | | || || ||||| ||||| | | Sbjct 33598 ATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTG 33539 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| |||||| ||| |||||||||||| || ||||| ||| | Sbjct 33538 AGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAG 33479 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||| || | |||||||| ||| | || || | || || || ||| ||| Sbjct 33478 AGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTG 33419 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 | ||| | | ||| | ||| ||| | ||| |||| || ||||| || || Sbjct 33418 AGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATT 33359 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACT--TTGTTTCCAATTTTGAGCA 149700 || || ||||| | ||| ||||| || |||||| ||| ||| || || || | Sbjct 33358 GCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC--ATCTTAAGAA 33301 Query 149701 AGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 ||| ||||| || || || |||||||||| | || |||||||| ||| Sbjct 33300 GGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGG 33248 >seq1319 Length=24917 Score = 286 bits (316), Expect = 3e-72 Identities = 620/919 (67%), Gaps = 19/919 (2%) Strand=Plus/Plus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || || ||||| || ||| ||| |||| | |||| | |||||||||| |||| Sbjct 9014 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCAC 9073 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 |||||| | ||||| ||||| ||||| ||| |||||||| |||||| |||||| Sbjct 9074 AGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCC 9133 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCA 149004 |||||||||||||| || ||| || || | ||||| |||| ||| || | | || Sbjct 9134 TTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCA--CA 9191 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 |||||| || |||||| || || | || ||||| | |||||| ||| || Sbjct 9192 AGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGT 9251 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 | ||| |||| ||||| ||| || ||||||||||||||| | || |||||||| | Sbjct 9252 CCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGG 9311 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| | ||| | | ||| | || ||| ||||| ||||| | ||| || | || | Sbjct 9312 ACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTCCATAGA 9371 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244 ||| || || ||| || || || ||| ||||||| ||||| | Sbjct 9372 AGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAA 9431 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG-CGCTTG---CCG 149300 | |||||||||||||||||||| | ||| | || | || |||| | | |||| || Sbjct 9432 AGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC-CCCTGGCCTCTTGCCTCCC 9490 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 |||||||| |||| |||| || || || || || | | ||| || | | || || Sbjct 9491 CCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG 9550 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 || || || || ||||| |||| |||| || | ||||| || || | Sbjct 9551 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 9610 Query 149421 CCGAT----GCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 ||||| |||||||| | ||| || | ||||| | ||||| |||||| Sbjct 9611 CCGATTCCCCCCGCCGCCTTGCTT----ATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 9666 Query 149477 GCCCTCGATGCTGTCGCGCTT-CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 || |||| ||| ||||| ||||| ||| || ||||||||| |||| ||||| |||| Sbjct 9667 ACCAACGATCGAGTC-CGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 9725 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 ||||||| || ||| | || ||| |||||| | || | || | |||||| | || Sbjct 9726 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 9785 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 |||| | ||| | || | || || || |||||||| || | ||| ||||||| | Sbjct 9786 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCCACGCGCAGAA 9845 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTA 149715 |||| | |||||| |||||| |||| ||| || || || ||||||||| | ||| | Sbjct 9846 GCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGTTCCA 9905 Query 149716 GTGTCTTGTAGCCAAAGTA 149734 || ||| |||| || || Sbjct 9906 TGGTTTTGAAGCCGAAATA 9924 >seq259 Length=12200 Score = 159 bits (176), Expect = 3e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| ||| ||||||||||| || ||||| || || |||| | |||||| ||| Sbjct 5781 AAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGC 5722 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| ||||| ||||||| |||||||| || || ||||| || |||||||| ||| Sbjct 5721 TGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATC 5662 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | | ||| | |||||| ||||||||||||||| |||| ||| ||||| Sbjct 5661 TTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCC 5602 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 5601 GTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq6464 Length=44462 Score = 152 bits (168), Expect = 5e-32 Identities = 129/159 (81%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || ||||||| |||||||| || || ||||| || |||||| Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||| | | ||||| |||||| ||||||||||||| | || | | Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||| || || |||||||| ||||||||| Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 38591 >seq802 Length=4370 Score = 136 bits (150), Expect = 4e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| || ||||| || || |||| ||| || ||| Sbjct 281 AAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCCAGC 340 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || |||||||| ||||| || ||||| |||||||| ||| Sbjct 341 TGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATC 400 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||| | | || | || ||| ||||||| || || | |||| ||| ||||| Sbjct 401 TTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTGCCC 460 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||||| || || ||||| |||||||||| Sbjct 461 GTCAGGGTCTTGACGAAGATCTGCATGG 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379346666400