Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq5823 93.3 4e-14 >seq5823 Length=45548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 187/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 142570 GCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAA 142629 || |||||||| || || | | | ||||| || || |||||||||||| | | |||| Sbjct 5896 GCCTGGAACCCCGCGGATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAA 5837 Query 142630 TTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGG 142689 ||| |||||| || | || | || || || ||| ||||||||||||| |||||| | Sbjct 5836 TTCTACGTCGCA--GACGGAGAG-CTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATG 5780 Query 142690 TTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTGCTCGC 142749 | || || |||||||| ||||| || ||||| || | |||| | | |||| Sbjct 5779 GGGTTGGGTGTGCCGTTCAATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAA 5720 Query 142750 GAATGCGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCACATCTACGAT 142809 | || || || || |||||| ||| | ||||| | || || | || | ||| Sbjct 5719 GTCTGTGGCTTGAAAGCCGGAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTG 5660 Query 142810 ACACACGAAGAAGCTGTGAAAGAACAACTCAGCCG 142844 | || | ||| || ||||||| || |||| ||| Sbjct 5659 AATCATGTAGACGCGCTGAAAGAGCAGCTCACCCG 5625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500456282193600