Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq2348 87.8 4e-12 >seq2348 Length=90098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 172/243 (71%), Gaps = 15/243 (6%) Strand=Plus/Minus Query 299061 TATCGTGGTGAATTTGAAGA-ACGCATCGACAATTTGCTAAAAGAAC-TAAAGAA-ACGT 299117 ||||| |||||||||||||| | || || || ||| ||| ||||| | | || | || Sbjct 89702 TATCGAGGTGAATTTGAAGAGAGGCTTCAAC--TTT--TAATAGAACATGCACAAGATGT 89647 Query 299118 GAAA-ATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAG 299176 |||||||| | ||||||||||||||||||| | | | |||||||| || ||| Sbjct 89646 CCCTGATACTATTTTATTCATTGATGAAATTCATACTTTAATAGGGGCTGGATCGGCA-- 89589 Query 299177 TAATGGTTCTATGGACATG-AGC-AATATGCTTAAGCCAGCACTTTCACGTGGTGAGATT 299234 | || | |||| ||| ||| |||||||||||||||| || || | || | || Sbjct 89588 -GAAGGGACAATGG--ATGCAGCAAATATGCTTAAGCCAGTTCTATCGAGAGGAAAATTT 89532 Query 299235 CGTGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCA 299294 | ||||| ||||||||| ||||||||| || |||||||| |||| ||| Sbjct 89531 AGATGCATTGGAGCAACAACAACCGATGAATATAAAAAGTATATCGAGCGAGATCCAGCA 89472 Query 299295 TTA 299297 ||| Sbjct 89471 TTA 89469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115073183421340