Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2348 609 7e-170 >seq2348 Length=90098 Score = 609 bits (674), Expect = 7e-170 Identities = 683/904 (76%), Gaps = 12/904 (1%) Strand=Plus/Plus Query 19584 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 |||| || | ||||||||| || || ||||| || || || ||||| || || ||||| | Sbjct 63603 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 63662 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 |||| ||||| || | || ||| | || ||||||||||| || | || || || Sbjct 63663 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTA 63722 Query 19704 TTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTG 19763 |||| || || || || || | |||||||||||| ||||||||||| || | | Sbjct 63723 TTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 63782 Query 19764 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCA 19823 | |||||||| |||||||| || || | ||||||||| || || |||||| | | || Sbjct 63783 ACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 63842 Query 19824 T--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | || |||| |||||||||| || |||||||||||||| || |||| ||| | ||||| Sbjct 63843 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 63900 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCC 19941 ||||| || || | ||| ||||| || || || || ||| || || | | ||||| Sbjct 63901 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCC 63960 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 | || || ||||||||||| |||| ||||||||| |||||||| ||||| ||||||| Sbjct 63961 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTT 64020 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 |||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||| |||||| Sbjct 64021 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 64080 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||| || ||||| || |||||||||| ||||| ||||| ||||| || || | Sbjct 64081 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATC-TA 64139 Query 20122 GCTTG-TGCGTGAGACTACTGAACA-GGAAAGTCAG--AACTATGGTTACAAGTTTGGGC 20177 | || | ||||| ||| ||| | || || | ||||| |||||||| ||||| | Sbjct 64140 GTTTAATCCGTGAAACT---GAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGAC 64196 Query 20178 AAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCC 20237 |||||||||| || || ||||||||||| || || ||||||||||||||||| ||||||| Sbjct 64197 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 64256 Query 20238 AATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 20297 ||||||| ||||||||| ||| || ||||||||||| | ||||| ||||| || | Sbjct 64257 AATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTG 64316 Query 20298 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCA 20357 |||| || ||||| |||| | || || |||||||| || || | ||||| |||| Sbjct 64317 TAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCA 64376 Query 20358 ACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 |||| ||||| || || | || | | | |||||||| || | ||||||||||||||| Sbjct 64377 ACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 64436 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477 |||| |||||| || | || | || || ||||| ||||| || || || |||||||| | Sbjct 64437 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 64496 Query 20478 TTGA 20481 | || Sbjct 64497 TAGA 64500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148816676033880