Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2348 598 1e-166 >seq2348 Length=90098 Score = 598 bits (662), Expect = 1e-166 Identities = 680/905 (75%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 28712 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 |||| || | ||||||||| || || ||||| || ||||| ||||| || || ||||| | Sbjct 63603 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 63662 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 |||| ||||| || |||||| ||| | || ||||||||||| || | || || || Sbjct 63663 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTA 63722 Query 28832 TACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 28891 | || || || || || || | |||||||||||| ||||||||||| || | | Sbjct 63723 TTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 63782 Query 28892 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 28951 | |||||||| |||||||| || || | ||||||||| || || |||||| | | || | Sbjct 63783 ACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 63842 Query 28952 T--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTG 29009 | || ||| ||||||||||| || |||||||||||||| || |||| ||| | || || Sbjct 63843 TAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 63900 Query 29010 GATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCC 29069 ||||| || || | ||||||||| || || || ||| ||| || ||| | | ||||| Sbjct 63901 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCC 63960 Query 29070 ATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTA 29129 | |||| |||||| || || | |||||||| ||||| || || || ||||||| Sbjct 63961 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTT 64020 Query 29130 CATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 |||| | || |||||||| ||||| |||||||| |||||||| ||||| ||| || || Sbjct 64021 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 64080 Query 29190 TGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTC 29249 |||||| ||||| ||||| || |||| ||||||||||| ||||| ||||| || | || Sbjct 64081 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACAT-CTA 64139 Query 29250 GCTT-GTGCGTGAGACGACTGAAGAC---ATCTCTCAGAACTATGGTTACAAGTTTGGAC 29305 | || | ||||| ||||||||| | ||| ||||| |||||||| ||||||| Sbjct 64140 GTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGAC 64196 Query 29306 AAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCC 29365 |||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 64197 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 64256 Query 29366 AATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 29425 |||| || |||||| || ||| || ||||||||||| | ||||| ||||| || | Sbjct 64257 AATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTG 64316 Query 29426 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTA 29485 |||| || ||||| |||| | || || |||||||| || || | ||||| || | Sbjct 64317 TAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCA 64376 Query 29486 ACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTC 29545 |||| ||||| || || | || | | | |||||||| || || ||||||||||| || Sbjct 64377 ACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 64436 Query 29546 TCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCAC 29605 |||| || ||| | | || | ||||||||||| || ||||| || || |||||||| | Sbjct 64437 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 64496 Query 29606 TTGAT 29610 | ||| Sbjct 64497 TAGAT 64501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146653652253560