Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2348 614 2e-171 >seq2348 Length=90098 Score = 614 bits (680), Expect = 2e-171 Identities = 726/977 (74%), Gaps = 6/977 (1%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || || ||||| |||||| | || ||||| ||||| || | ||||| || Sbjct 63533 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 63592 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | ||||||| | || ||||| || || ||||| || |||||||| ||||| Sbjct 63593 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 63652 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 || ||||| ||||| || || || || || ||| | || ||||||||||| || | Sbjct 63653 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 63712 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || || || |||| || || || || || | |||||||||||| ||||||||||| Sbjct 63713 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 63772 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || | || |||||||| |||||||| || || | ||||||||| || || |||||| Sbjct 63773 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 63832 Query 19033 CTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 | | || || || ||| ||||||||||| || |||||||||||||| || |||||| Sbjct 63833 TTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGA 63890 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| || || | ||||||||| || || ||||| ||| || ||| Sbjct 63891 TGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCT 63950 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | | || ||| | || |||||| ||| || | ||||||||| ||||| ||||| Sbjct 63951 TAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTA 64010 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | ||||||| |||| | |||||||| || ||||| ||||| || |||||||| ||||| | Sbjct 64011 CTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATA 64070 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 || ||||| ||||||||||| || || || |||| ||||| ||||| ||||| |||| Sbjct 64071 TGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTG 64130 Query 19331 TTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAG 19389 | || | || | || | ||||||||| || | |||||| ||||| || ||||| Sbjct 64131 TAACAT-CTAGTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAA 64189 Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 ||||| ||||||||||| ||||| ||||| || ||||| || || || ||||| || | Sbjct 64190 TTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTA 64249 Query 19450 ATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGG 19509 || ||||| |||||| |||||||| ||| || |||| ||||| || ||||||||| Sbjct 64250 ATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGG 64309 Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 || || || || || ||||| | || ||||| | ||||| |||||||||||||| || Sbjct 64310 CCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAAC 64369 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || ||||| ||||| || || |||| | | | |||||||| || | ||||||||| Sbjct 64370 GGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCT 64429 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 |||||| |||| |||||| | | || | || ||||||||||||||||| || || ||| Sbjct 64430 GACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAAC 64489 Query 19690 TTCCCACTTGATTTGGC 19706 ||||| || ||||| || Sbjct 64490 TTCCCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141137301665880