Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2149 141 9e-29 seq802 127 2e-24 seq259 104 2e-17 >seq2149 Length=43014 Score = 141 bits (156), Expect = 9e-29 Identities = 606/939 (65%), Gaps = 29/939 (3%) Strand=Plus/Minus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCA 147524 || ||||| |||||||| || ||| |||| || || |||||| | ||| || | ||| Sbjct 34177 GAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCGTGCA 34119 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 ||| ||| |||| ||| ||||| || ||||| || |||| | ||||| ||||| Sbjct 34118 CAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTC 34059 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATG 147641 ||||| |||||||| || ||| ||||| || || | || | || |||| | Sbjct 34058 CTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAG 33999 Query 147642 CAGGTCCTGCGC--TCGCACCCGCTGCC-GATAGCGGCCCTCGTTTTCGTACCGCTCGTA 147698 | | ||| || | | || ||| | | | | ||| || ||||| | |||| Sbjct 33998 CTG---CTGGGCCTTAATAACCT-TGCGTGCTTTCC-CACTC-TTCTCGTAGCTGGCGTA 33945 Query 147699 CAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACAT 147758 | | | | |||||| |||||| | || || ||||| || |||| | || || | Sbjct 33944 GAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAA 33885 Query 147759 CAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC 147818 || ||||| |||| | ||||| ||||| ||||| || ||| ||| || || Sbjct 33884 AAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGC 33825 Query 147819 GTACATAAGATCGCGCGCTT--TGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGC 147876 ||| | ||||| || || | ||| |||| ||| ||| || | || Sbjct 33824 GTAGAACAGATCACGTGCACGCTCCAA--CTCGTTGCCGTGGTTCTTACGCAGGTCCAGG 33767 Query 147877 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT- 147935 | | ||||||| || |||||||| || | ||||| ||| | | ||| || ||||| Sbjct 33766 AATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTG 33707 Query 147936 --TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGG 147993 ||||||||||||||| | ||| || | | ||| || ||||| | ||| ||| | | | Sbjct 33706 CCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATG 33647 Query 147994 CCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053 ||| | | |||||||| | | || | | | | || || || | | ||| | | Sbjct 33646 CCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATG 33587 Query 148054 TTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGT-GTA 148112 |||||||| || || | | || || |||||||||| || || | | || ||| Sbjct 33586 GATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGC-ATTGCTTGAGGGTGTCGTA 33528 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 ||||||||||||| ||| | || | | || | || || || | | ||| || Sbjct 33527 GATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCG 33468 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232 | | || || || |||||| || || | || ||||| | || ||||| | ||| Sbjct 33467 CGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGA--AAAGTTTGA-GCGACAT 33411 Query 148233 GCGA---TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 | || || ||||| | || | || |||| || ||| || || | || || || Sbjct 33410 GAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACG 33351 Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349 ||||| ||||||||| || || || |||| ||| ||||| ||||| || || Sbjct 33350 CATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAGGTACGACTT 33291 Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 ||| || ||||| | |||||||| | |||||||| || Sbjct 33290 TTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 33252 >seq802 Length=4370 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||||||||| ||||| || | | |||||||||| |||||||||||||| || || Sbjct 265 ACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGT 324 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | ||||| ||||| ||||| || || ||||| Sbjct 325 GCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCC 384 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| ||||| |||| | ||| | |||||| | ||||| || || | Sbjct 385 CTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAA 444 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 445 TGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 487 >seq259 Length=12200 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| |||| |||||||||| | | |||||||| |||||||||||||| || || Sbjct 5797 ACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGT 5738 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || || | | | || || ||||| ||||| || || || || Sbjct 5737 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACC 5678 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | || || | |||||||| |||| Sbjct 5677 CTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAG 5618 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | || || ||||| Sbjct 5617 CGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570330589600