Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5823 181 1e-40 >seq5823 Length=45548 Score = 181 bits (200), Expect = 1e-40 Identities = 493/749 (66%), Gaps = 7/749 (1%) Strand=Plus/Plus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 ||||| ||||| | ||| ||| ||| || ||||| |||||| | || || || || Sbjct 5601 AGCTTCGGGAAAGATCGAGGGGTCCGGGTGAGCTGCTCTTTCAGCGCGTCTACATGATTC 5660 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 ||||| || || || ||||| | ||||| | || || || | || | ||| || Sbjct 5661 AGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCACAGACT 5720 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || || |||| | || | || | ||| ||| || ||||| || || |||| ||| Sbjct 5721 TGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCCAACCCC 5780 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 ||||| | || | ||| |||| ||| || |||||||| ||||| || ||||| || ||| Sbjct 5781 ATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTAGAATTGG 5840 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 || | ||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 5841 CAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAGGCCGAT 5900 Query 147178 ACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGG 147237 || | | || | ||| ||||| ||| || || ||| || |||| Sbjct 5901 ACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTTATTGCCCGAGCCAACTGG 5960 Query 147238 TCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGCCT 147296 || | ||| | ||| ||||| ||| ||| |||| ||| ||||| || |||| Sbjct 5961 TCGATGCCTTTGCCAGTGTAGTCTGT-GTGCATGTCCGAATACTCCGCCCCGAAATGCCG 6019 Query 147297 CCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG 147356 ||| ||||||||||| || || |||| || || | | ||| || | |||| Sbjct 6020 CCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCCGGTGAGAAAGGCCCAATTT 6079 Query 147357 CTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTC 147416 | ||| | || |||| || |||||||||| || | | || | | | Sbjct 6080 GTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGATTCCAATTTTTTTCTCCTTCAAATA 6139 Query 147417 CTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAA 147476 || | || || || || ||||||||| | || || || ||||| | |||||| Sbjct 6140 ATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCTTCGGCCACCCCGCGCCAAAA 6199 Query 147477 GACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGTCCCTCAGCGAATACCTCGCCTGGTC 147533 ||||| ||||||||| |||| || || || || | ||| ||| ||| |||| | Sbjct 6200 GACCCGCTTGGTGGTGAGCAACGGAAAGGTCTCATCACGCAGGGAAAACCGAAGCTGGGC 6259 Query 147534 CCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCGTCCCGTTCTCCAA 147593 ||||| || || ||||| || ||||| |||| ||| ||| |||||| ||| | Sbjct 6260 GCCAAATTTTGAGAGGGTGCCTGTCTGCGTCCGGTCCCCCCGCCGCTTCCCGTGCTCGAT 6319 Query 147594 AATCTCCCTGACGGTGTTG-AGGTACTGG 147621 |||| |||| | || | ||||||||| Sbjct 6320 GATCT-CCTGCACGAGTCGCAGGTACTGG 6347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583437965904000